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Table 2 Transcripts regulated in mature ovary relative to vitellogenic ovary

From: New insights into molecular pathways associated with flatfish ovarian development and atresia revealed by transcriptional analysis

Clone ID

GenBank accession

FCa

UniProtKB/TrEMBL entry

Swiss-Prot hit

BLAST

E-valueb

Length (% identity)

Gene Symbol

pgsP0012B12

FF285326

+4.54

B6NTA9

Hypothetical protein BRAFLDRAFT_128798 [Branchiostoma floridae]

2E-14

107 (41%)

BRAFLDRAFT_128798

pgsP0016M08

FF286940

+2.56

Q6NYH5

ATPase, Na+\/K+ transporting, beta 1a polypeptide [Danio rerio]

2E-10

39 (76%)

atp1b1a

pgsP0013H16

FF285803

+2.51

Q8AY58

Sodium/potassium ATPase alpha subunit isoform 1 [Fundulus heteroclitus]

2E-118

213 (95%)

atp1a1

pgsP0017B15

FF287055

+2.22

Q67EX5

Alpha-2-macroglobulin [Sparus aurata]

4E-81

221 (70%)

a 2m

pgsP0023I10

FF289288

+1.97

Q56V59

Sodium potassium ATPase beta subunit [Rhabdosargus sarba]

1E-79

216 (62%)

atpb

pgsP0030L16

FF291822

+1.86

Q694W8

Myosin 10 [Xenopus laevis]

5E-32

78 (83%)

myo10

pgsP0027A07

FF290524

+1.75

Q9UL19

Retinoic acid receptor responder protein 3 [Homo sapiens]

5E-15

108 (40%)

rarres3

pgsP0007C11

FF283652

+1.69

 

Unknown

   

pgsP0009C03

FF284311

+1.64

 

Unknown

   

pgsP0022M06

FF289024

+1.64

Q7ZWB6

Thioredoxin interacting protein [D. rerio]

2E-108

296 (68%)

txnip

pgsP0013B15

FF285673

+1.61

Q7SZR1

Transducer of ERBB2, 1a [D. rerio]

1E-57

175 (77%)

tob1a

pgsP0022B09

FF288784

+1.60

A9ZTB5

Ribosomal protein L36 [Solea senegalensis]

3E-46

94 (100%)

rpl36

pgsP0003B14

FF282371

+1.57

 

Unknown

   

pgsP0027G11

FF290655

+1.55

 

Unknown

   

pgsP0019D13

FF287779

+1.45

 

Unknown

   

pgsP0005H14

FF283112

+1.42

 

Unknown

   

pgsP0001N17

FF282035

+1.41

Q5FWL4

Extended synaptotagmin-2-A [X. laevis]

7E-58

144 (74%)

e-syt2-a

pgsP0022B24

FF288799

+1.40

Q5NU14

Makorin RING zinc finger protein 1a [Takifugu rubripes]

4E-64

224 (50%)

mkrn1

pgsP0022J20

FF288970

+1.40

Q9WTY9

Mitogen-activated protein kinase p38delta [Rattus norvegicus]

3E-29

127 (49%)

mapk13

pgsP0027B20

FF290555

+1.39

Q6P5M5

Novel protein similar to vertebrate ADP-ribosylation factor 4 [D. rerio]

6E-76

174 (86%)

zgc:77650

pgsP0021P08

FF288738

+1.39

Q0KJ16

NADH dehydrogenase subunit 1 [S. senegalensis]

2E-124

280 (88%)

nd1

pgsP0017G22

FF287169

+1.38

Q0KJ14

Cytochrome c oxidase subunit I [S. senegalensis]

3E-84

230 (92%)

cox1

pgsP0007O02

FF283892

+1.37

A8WGP7

UDP-glucose dehydrogenase [D. rerio]

1E-38

104 (75%)

ugdh

pgsP0018P15

FF287693

+1.36

Q63ZU3

Myeloid-associated differentiation marker homolog [X. laevis]

3E-15

93 (47%)

myadm

pgsP0029B12

FF291245

+1.36

Q4QY72

Type II keratin E3-like protein [S. aurata]

4E-108

217 (92%)

 

pgsP0006O02

FF283575

+1.32

 

Unknown

   

pgsP0027D07

FF290586

-2.49

 

Unknown

   

pgsP0017L02

FF287257

-2.31

Q9PTQ8

Type II Na/Pi cotransport system protein [D. rerio]

7E-32

128 (73%)

slc34a2a

pgsP0023F13

FF289226

-2.11

Q5M901

Myosin binding protein H [X. tropicalis]

1E-46

139 (64%)

mybph

pgsP0002P23

FF282343

-1.80

 

Unknown

   

pgsP0019F07

FF287815

-1.72

Q5XWB3

Ubiquitous gelsolin [D. rerio]

2E-81

192 (72%)

gsna

pgsP0009J15

FF284472

-1.71

Q007T0

Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Sus scrofa]

1E-08

30 (93%)

sdhb

pgsP0023H12

FF289266

-1.71

A2CEC9

Novel protein similar to centaurin, delta 2 [D. rerio]

5E-36

272 (36%)

LOC100005008

pgsP0009A17

FF284280

-1.70

Q28CL4

Inositol monophosphatase 3 [X. tropicalis]

7E-12

66 (71%)

impa3

pgsP0024D08

FF289528

-1.59

 

Unknown

   

pgsP0022O08

FF289072

-1.53

Q7SXH8

Coagulation factor II (thrombin) [D. rerio]

4E-88

140 (76%)

f 2

pgsP0010A15

FF284617

-1.48

Q6J514

Monocytic leukemia zinc finger protein [D. rerio]

3E-22

96 (90%)

myst3

pgsP0029E16

FF291319

-1.46

Q6P8F7

Fructose-1,6-bisphosphatase [X. tropicalis]

1E-132

231 (77%)

fbp1

pgsP0019H08

FF287862

-1.43

XP_001920639

Similar to apolipoprotein L, 3 [D. rerio]

9E-60

115 (72%)

LOC100150119

pgsP0015B20

FF286358

-1.43

Q8AYL1

Zona pellucida C2 [Oryzias latipes]

9E-69

161 (67%)

zpc2

pgsP0018J23

FF287569

-1.40

B2R4S9

Histone 1, H2bc, isoform CRA_a [H. sapiens]

3E-35

77 (97%)

hist1h2be

pgsP0029D07

FF291286

-1.39

P62260

14-3-3 protein epsilon [R. norvegicus]

2E-20

65 (76%)

ywhae

pgsP0030I24

FF291759

-1.39

 

Unknown

   

pgsP0013O20

FF285955

-1.38

 

Unknown

   

pgsP0020J11

FF288260

-1.36

 

Unknown

   

pgsP0023L15

FF289356

-1.33

 

Unknown

   
  1. aFold change; b Extent of BLASTX hit aligned region (in amino acids), and percent identity over the aligned region.