Table 1 List of new miRNAs cloned from bovine ovary

bomir-22*/22-5p^a

22

hsa-miR-22

3

+/-

ACAGUUCUUCA

ACUGGCAGCUU

19:22901905:

22901926:1^f

miR trans.

bomir140*/140-5p^b

22

hsa-miR-140

1

+

CAGUGGUUUUA

CCCUAUGGUAG

18:35987052:

35987073:1^f

miR trans.

bomir-143-3p

22

ggo-miR-143

11

+/-

UGAGAUGAAGC

ACUGUAGCUCG

7:60268857:

60268878:1^f

Intergenic

bomir-152-5p

21

hsa-miR-152

1

-

CCAAGUUCUG

UCAUGCACUGA

19:39650399:

39650419:-1^f

Intragenic

bomir-193a-2-3p^c

19

bta-miR193a

1

-

GGGACUUUGU

AGGCCAGUU

14:889828:

889846:-1^f

Intronic

bomir-378-1-3p

21

hsa-miR-378

1

+

CUGGACUUGGA

GUCAGAAGGC

7:60536513:

60536533:1^f

Intronic

bomir-378-2-5p

21

hsa-miR-378

- -

+

CUGGACUUGG

AGUCAGAAGGC

4:11116898:

11116918:1^h

Intronic

bomir-382-3p

22

hsa-miR-382

1

-

GAAUCCACCAC

GAACAACUUC

21:66031757:

66031777:-1^f

Intronic

bomir-409-5p

22

hsa-miR-409

2

-

GGGGUUCACCG

AGCAACAUUC

21:66042162:

66042182:-1^f

Intronic

bomir-424-3p

22

hsa-miR-424*

1

-

CAAAACGUGAG

GCGCUGCUAU

Un.04.53:446874:

446894:-1^f

Intronic

bomir-503-3p

23

mmu-miR-503

1

+

UGCAGUACUGU

UCCCGCUGCUA

Un.004.53:446563:

446584:1^f

Intergenic

bomir-542-3p

23

hsa-miR-542

1

+

UCUCGUGACAU

GAUGAUCCCCGA

Un.004.53:441604:

441626:1^f

Intergenic

bomir-574-5p

22

hsa-miR-574

1

-

UGUGGGUGUGU

GCAUGUGCGUG

16:59370677:

59370698:-1^f

Intergenic

bomir-652-3p^d

21

hsa-miR-652

5

+

CACAACCCTA

GTGGCGCCATT

(from H. sap.)

-----

bomir-940-5p

18

hsa-miR-940

1

-

GCAGGGCCC

CCGCUCCCC

20:75274475:

75274492:-1^h

Intergenic

bomir-F0131-5p

18

mmu-miR-667

1

+

GGGGCGGGG

GGGCGGGUG

7:10905965:

10905982:1^h

Intergenic

bomir-F0132-5p

19

hsa-miR-1469

1

+

AGCCCGGGC

CCCUCCCCUG

7:13891718:

13891736:1^h

Intragenic

bomir-H0121-3p

19

hsa-miR-1471

1

+

CUUCCCGUG

UGUUGAGCC

18:7202610:

7202627:1^h

Intergenic

bomir-F0244-5p

19

osa-miR1423

1

-

GCUACUACC

GAUUGGAUGG

12:45758300:

45758318:-1^g

Intergenic

bomir-H0222-3p

22

cre-miR1172.1

1

-

GGACGGCGGCA

GCGCCGGGGCG

29:41706141:

41706159:-1^f

Intergenic

bomir-A0321-3p

18

mml-miR-638

1

+

AGCGCCGCC

GGCCGCACC

19:39110507:

39110524:1^g

Intronic

bomir-C0533-5p

20

oan-miR-1418*

1

+

CGGGACCGGG

GUCCGGUGCG

18:59928733:

59928752:1^f

Intergenic

21:52041918:

52041937:-1^f

Intergenic

bomir-F0522-1-3p

19

hsa-miR-1234

1

+

GGUGGGGUGG

GGGGGUUGG

21:35870379:

35870397:1^h

Intergenic

22:59347395:

59347413:1^h

Intronic

bomir-B0821-5p

21

oan-miR-1394

1

-

GUCCCCGGGGC

UCCCGCCGGC

20:19373746:

19373766:-1^h

Intergenic

bomir-F1351-3p

20

gga-miR-1607

3

+

GCCCCGGCCG

CUCCCGGCCU

25:41129497:

41129516:1^h

Intergenic

bomir-F1353-5p

20

dre-miR-430c

1

+

AUCUUUGGGC

UAGGUUAGUU

28:27885036:

27885055:1^h

Intronic

bomir-D1431-5p

22

pta-miR1310

2

-

GGCGACGGAGG

CGCGACCCCCC

12:75102030:

75102051:-1^g

Intergenic

bomir-C1511-5p

20

hsa-miR-877

1

+

GUGGAGGAGA

AUGCCCGGGG

Un.04.1059:20639:

20658:1^h

Intronic

bomir-F1821-3p

21

hsa-miR-631

1

+

AGCCCUGGCCC

UGCCAUCGUG

Un.04.152:123191:

123211:1^h

Intronic

bomir-C1931-5p

23

gma-miR1523

1

+

CCUGCUGAUCU

CACAUUAAUUCA

26:12405838:

12405860:1^h

Intergenic

bomir-A2143-3p

18

oan-miR-181c*

1

+

CGGCAGAUG

AAGUCCAUC

16:47801336:

47801353:1^h

Intronic

bomir-F2422-5p

20

hsa-miR-659

1

+

GGUGGGAGGG

UCCCACCGAG

18:53584142:

53584161:1^h

Intragenic

bomir-F2531-3p

18

ppt-miR1030i

3

+

UGGUGGAGA

UGCCGGGGA

8:77307661:

77307678:1^g

Intergenic

bomir-G2511-3p

18

bmo-miR-92

1

+

AGGCGGGCC

GGGGUUGGA

18:41190536:

41190553:1^h

Intergenic

bomir-E2664-3p

20

mml-miR-638

1

-

AGGGCGGGCG

GCGACUGGAA

18:64361001:

64361020:-1^h

Intragenic

bomir-D3011-3p

21

mml-miR-650b

1

+

CCGAGUGCUC

CCGCGAGCGCU

18:39424938:

39424958:1^g

Intragenic

bomir-A3341-1-3p

22

bta-miR-487a

1

+

GUGGCUGUCCC

UGGAGGUGGG

3:124988008:

124988028:1^h

Intergenic

Un.04.4799:1335:

1355:1^h

Intergenic

bomir-A3711-5p

19

hsa-miR-937

2

+

UUCCGCGCUC

UACGCCAGC

9:63475804:

63475822:1^g

Intergenic

bomir-A4052-1-5p

19

hsa-miR-615

1

+

GGGAGCCUCG

GUUGGCCUC

18:59928630:

59928648:1^f

Intergenic

21:52042022:

52042040:-1^f

Intragenic

Un.04.2732:16069:

16087:-1^f

Intergenic