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Table 1 List of new miRNAs cloned from bovine ovary

From: Identification and characterization of miRNAs expressed in the bovine ovary

miR ID Length Homolog Copy Strand Sequence Genomic Locatione Transcript
bomir-22*/22-5pa 22 hsa-miR-22 3 +/- ACAGUUCUUCA
ACUGGCAGCUU
19:22901905:
22901926:1f
miR trans.
bomir140*/140-5pb 22 hsa-miR-140 1 + CAGUGGUUUUA
CCCUAUGGUAG
18:35987052:
35987073:1f
miR trans.
bomir-143-3p 22 ggo-miR-143 11 +/- UGAGAUGAAGC
ACUGUAGCUCG
7:60268857:
60268878:1f
Intergenic
bomir-152-5p 21 hsa-miR-152 1 - CCAAGUUCUG
UCAUGCACUGA
19:39650399:
39650419:-1f
Intragenic
bomir-193a-2-3pc 19 bta-miR193a 1 - GGGACUUUGU
AGGCCAGUU
14:889828:
889846:-1f
Intronic
bomir-378-1-3p 21 hsa-miR-378 1 + CUGGACUUGGA
GUCAGAAGGC
7:60536513:
60536533:1f
Intronic
bomir-378-2-5p 21 hsa-miR-378 - - + CUGGACUUGG
AGUCAGAAGGC
4:11116898:
11116918:1h
Intronic
bomir-382-3p 22 hsa-miR-382 1 - GAAUCCACCAC
GAACAACUUC
21:66031757:
66031777:-1f
Intronic
bomir-409-5p 22 hsa-miR-409 2 - GGGGUUCACCG
AGCAACAUUC
21:66042162:
66042182:-1f
Intronic
bomir-424-3p 22 hsa-miR-424* 1 - CAAAACGUGAG
GCGCUGCUAU
Un.04.53:446874:
446894:-1f
Intronic
bomir-503-3p 23 mmu-miR-503 1 + UGCAGUACUGU
UCCCGCUGCUA
Un.004.53:446563:
446584:1f
Intergenic
bomir-542-3p 23 hsa-miR-542 1 + UCUCGUGACAU
GAUGAUCCCCGA
Un.004.53:441604:
441626:1f
Intergenic
bomir-574-5p 22 hsa-miR-574 1 - UGUGGGUGUGU
GCAUGUGCGUG
16:59370677:
59370698:-1f
Intergenic
bomir-652-3pd 21 hsa-miR-652 5 + CACAACCCTA
GTGGCGCCATT
(from H. sap.) -----
bomir-940-5p 18 hsa-miR-940 1 - GCAGGGCCC
CCGCUCCCC
20:75274475:
75274492:-1h
Intergenic
bomir-F0131-5p 18 mmu-miR-667 1 + GGGGCGGGG
GGGCGGGUG
7:10905965:
10905982:1h
Intergenic
bomir-F0132-5p 19 hsa-miR-1469 1 + AGCCCGGGC
CCCUCCCCUG
7:13891718:
13891736:1h
Intragenic
bomir-H0121-3p 19 hsa-miR-1471 1 + CUUCCCGUG
UGUUGAGCC
18:7202610:
7202627:1h
Intergenic
bomir-F0244-5p 19 osa-miR1423 1 - GCUACUACC
GAUUGGAUGG
12:45758300:
45758318:-1g
Intergenic
bomir-H0222-3p 22 cre-miR1172.1 1 - GGACGGCGGCA
GCGCCGGGGCG
29:41706141:
41706159:-1f
Intergenic
bomir-A0321-3p 18 mml-miR-638 1 + AGCGCCGCC
GGCCGCACC
19:39110507:
39110524:1g
Intronic
bomir-C0533-5p 20 oan-miR-1418* 1 + CGGGACCGGG
GUCCGGUGCG
18:59928733:
59928752:1f
Intergenic
       21:52041918:
52041937:-1f
Intergenic
bomir-F0522-1-3p 19 hsa-miR-1234 1 + GGUGGGGUGG
GGGGGUUGG
21:35870379:
35870397:1h
Intergenic
       22:59347395:
59347413:1h
Intronic
bomir-B0821-5p 21 oan-miR-1394 1 - GUCCCCGGGGC
UCCCGCCGGC
20:19373746:
19373766:-1h
Intergenic
bomir-F1351-3p 20 gga-miR-1607 3 + GCCCCGGCCG
CUCCCGGCCU
25:41129497:
41129516:1h
Intergenic
bomir-F1353-5p 20 dre-miR-430c 1 + AUCUUUGGGC
UAGGUUAGUU
28:27885036:
27885055:1h
Intronic
bomir-D1431-5p 22 pta-miR1310 2 - GGCGACGGAGG
CGCGACCCCCC
12:75102030:
75102051:-1g
Intergenic
bomir-C1511-5p 20 hsa-miR-877 1 + GUGGAGGAGA
AUGCCCGGGG
Un.04.1059:20639:
20658:1h
Intronic
bomir-F1821-3p 21 hsa-miR-631 1 + AGCCCUGGCCC
UGCCAUCGUG
Un.04.152:123191:
123211:1h
Intronic
bomir-C1931-5p 23 gma-miR1523 1 + CCUGCUGAUCU
CACAUUAAUUCA
26:12405838:
12405860:1h
Intergenic
bomir-A2143-3p 18 oan-miR-181c* 1 + CGGCAGAUG
AAGUCCAUC
16:47801336:
47801353:1h
Intronic
bomir-F2422-5p 20 hsa-miR-659 1 + GGUGGGAGGG
UCCCACCGAG
18:53584142:
53584161:1h
Intragenic
bomir-F2531-3p 18 ppt-miR1030i 3 + UGGUGGAGA
UGCCGGGGA
8:77307661:
77307678:1g
Intergenic
bomir-G2511-3p 18 bmo-miR-92 1 + AGGCGGGCC
GGGGUUGGA
18:41190536:
41190553:1h
Intergenic
bomir-E2664-3p 20 mml-miR-638 1 - AGGGCGGGCG
GCGACUGGAA
18:64361001:
64361020:-1h
Intragenic
bomir-D3011-3p 21 mml-miR-650b 1 + CCGAGUGCUC
CCGCGAGCGCU
18:39424938:
39424958:1g
Intragenic
bomir-A3341-1-3p 22 bta-miR-487a 1 + GUGGCUGUCCC
UGGAGGUGGG
3:124988008:
124988028:1h
Intergenic
       Un.04.4799:1335:
1355:1h
Intergenic
bomir-A3711-5p 19 hsa-miR-937 2 + UUCCGCGCUC
UACGCCAGC
9:63475804:
63475822:1g
Intergenic
bomir-A4052-1-5p 19 hsa-miR-615 1 + GGGAGCCUCG
GUUGGCCUC
18:59928630:
59928648:1f
Intergenic
       21:52042022:
52042040:-1f
Intragenic
       Un.04.2732:16069:
16087:-1f
Intergenic
  1. a: Cloned sequence is homolog to has-miR 22 but not to bta-miR-22, may bta-miR-22 presented in miRBase v. 12 is bta-miR-22*, b: Cloned sequence is homologue to has-miR-140 but not to bta-miR-140, may bta-miR-140 presented in miRBase v. 12 is bta-miR-140*
  2. c: Sequence is smaller than bta-miR-193a and has different genomic locus. d: Sequence does not match to bovine genome, e: Genomic location presenting chromosome number with start and end position along with sense/antisense orientation by 1/-1 of cloned mature sequence. Conservation pattern of the predicted precursor sequences from flanking bovine genome sequence is indicated by- f: found in more than 6 mammalian species, g: present at least in 2 species, h: only in bovine.