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Table 3 Functional enrichments.

From: Ontology and diversity of transcript-associated microsatellites mined from a globe artichoke EST database

     

CDS

5'-UTR

 

ID

Name

unigenes

All SSRs

All SSRs

TRI

DI

AAG_CTT

ATC_GAT

AG_CT

All SSRs

DI

TRI

AG_CT

Biological process

GO:0006139

nucleic acid metabolic process

7,33

9,58

10,90

10,88

-

-

-

-

-

-

-

-

 

GO:0019219

regulation nucleic acid metab. process

3,30

5,85

7,56

8,21

-

-

9,09

-

-

-

-

7,86

 

GO:0006350

transcription

3,56

5,85

7,70

8,21

-

-

9,09

-

-

-

-

7,42

 

GO:0006351

transcription, DNA-dependent

1,99

-

4,65

4,96

-

-

-

-

-

-

-

-

 

GO:0006355

regulation of transcript., DNA-depend.

1,92

-

4,51

4,96

-

-

-

-

-

-

-

-

 

GO:0010467

gene expression

8,12

-

11,19

11,64

-

-

-

-

-

-

-

-

 

GO:0010468

regulation of gene expression

3,50

6,07

7,70

8,40

-

-

9,09

-

-

-

-

7,42

 

GO:0016070

RNA metabolic process

3,51

-

5,96

6,11

-

-

-

-

-

-

-

-

 

GO:0019222

regulation of metabolic process

3,62

6,36

7,85

8,59

-

-

9,09

-

-

6,83

-

7,86

 

GO:0031323

regulation of cellular metabolic process

3,45

6,14

7,70

8,40

-

-

9,09

-

-

-

-

7,86

 

GO:0032774

RNA biosynthetic process

1,99

-

4,65

4,96

-

-

-

-

-

-

-

-

 

GO:0045449

regulation of transcription

3,29

5,77

7,56

8,21

-

-

9,09

-

-

-

-

7,42

 

GO:0050789

regulation of biological process

4,17

6,94

8,58

9,16

-

-

-

-

-

-

-

-

 

GO:0050794

regulation of cellular process

3,82

6,65

8,43

8,97

-

-

9,09

-

-

-

-

7,86

 

GO:0065007

biological regulation

5,07

7,68

9,16

9,73

-

-

10,74

-

-

-

-

-

 

GO:0006281

DNA repair

0,48

-

-

-

-

-

-

3,61

-

-

-

-

 

GO:0002376

immune system process

0,32

-

-

-

2,73

-

-

-

-

-

-

-

 

GO:0050896

response to stimulus

5,60

-

-

-

11,82

-

-

13,25

-

-

-

-

 

GO:0006950

response to stress

2,71

-

-

-

-

-

-

8,43

-

-

-

-

 

GO:0006974

response to DNA damage stimulus

0,48

-

-

-

-

-

-

3,61

-

-

-

-

 

GO:0006855

multidrug transport

0,14

-

-

-

-

-

-

2,41

-

-

-

-

 

GO:0009266

response to temperature stimulus

0,63

1,46

-

-

-

-

-

-

1,90

-

-

-

 

GO:0009409

response to cold

0,38

-

-

-

-

-

-

-

1,14

-

-

-

 

GO:0009628

response to abiotic stimulus

1,46

-

-

-

-

-

-

-

2,91

-

-

-

 

GO:0009733

response to auxin stimulus

0,26

-

-

-

-

-

-

-

-

-

2,10

-

 

GO:0009737

response to abscisic acid stimulus

0,27

-

-

-

-

-

-

-

-

1,71

-

1,75

 

GO:0009738

abscisic acid mediated signaling

0,11

-

-

-

-

-

-

-

-

1,02

-

1,31

 

GO:0065004

protein-DNA complex assembly

0,19

-

-

-

-

2,17

-

-

-

-

-

-

 

GO:0046483

heterocycle metabolic process

0,75

-

-

-

-

3,62

-

-

-

-

-

-

Molecular function

GO:0003676

nucleic acid binding

8,89

13,67

17,01

-

-

18,12

-

18,07

-

-

-

-

 

GO:0003677

DNA binding

5,05

8,92

11,34

-

-

-

13,22

-

-

-

-

10,04

 

GO:0003700

transcription factor activity

3,34

6,51

8,14

-

-

-

9,09

-

-

6,48

-

8,30

 

GO:0008270

zinc ion binding

3,18

4,39

-

-

-

-

-

-

-

-

-

-

 

GO:0043169

cation binding

4,89

6,65

-

-

-

-

-

-

-

-

-

-

 

GO:0016667

oxidoreduct. activ. on SH group of donors

0,13

-

-

-

-

-

-

2,41

-

-

-

-

 

GO:0015297

antiporter activity

0,45

-

-

-

-

-

-

3,61

-

-

-

-

 

GO:0051219

phosphoprotein binding

0,11

-

-

-

-

-

-

-

0,63

1,71

-

1,75

 

GO:0004721

phosphoprotein phosphatase activity

0,93

-

-

-

-

-

-

-

2,02

-

-

-

 

GO:0005544

Ca-dependent phospholipid binding

0,03

-

-

-

-

-

-

-

-

-

1,40

-

 

GO:0015071

protein serine/threonine phosphatase activity

0,45

-

-

-

-

-

-

-

-

-

-

2,18

  1. GO terms statistically enriched (showed in percentage) for specific SSRs subsets. Fisher's exact test was performed between each SSRs subset versus the whole unigenes categorization; only significant over-represented subset are reported (p < 0,01). Analysis is displayed referring to "biological process" and "molecular function" classifications; "cellular component" is not reported due to the absence of particular enriched subsets.
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BMC Genomics

ISSN: 1471-2164

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