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Table 4 Hypoxia gene signatures overlapping

From: The l1-l2 regularization framework unmasks the hypoxia signature hidden in the transcriptome of a set of heterogeneous neuroblastoma cell lines

Gene Name

Overlap frequencya)

DDIT4

0/9

PDK1

1/9

WDR5B

1/9

AK3L1

2/9

E2IG5

2/9

ALDOC

3/9

VEGF

4/9

BNIP3

5/9

  1. a)Frequency of appearance of the genes in the 9 hypoxia signatures obtained from MsigDB (HYPOXIA_RCC_UP, MANALO_HYPOXIA_UP, MENSE_HYPOXIA_APOPTOSIS_GENES, HYPOXIA_FIBRO_UP, MENSE_HYPOXIA_TRANSPORTER_GENES, HYPOXIA_RCC_NOVHL_UP, HYPOXIA_REVIEW, MENSE_HYPOXIA_UP, HYPOXIA_NORMAL_UP).
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BMC Genomics

ISSN: 1471-2164

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