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Table 1 Pathogen strains in profile searches

From: Steps toward broad-spectrum therapeutics: discovering virulence-associated genes present in diverse human pathogens

Phylum or Class Strain Abbreviation
Firmicutes Bacillus anthracis str. Ames Ancestor Ba
Alphaproteobacteria Brucella melitensis 16M Bme
Alphaproteobacteria Rickettsia prowazekii str. Madrid E Rp
Betaproteobacteria Burkholderia mallei ATCC 23344 Bma
Betaproteobacteria Burkholderia pseudomallei K96243 Bp
Gammaproteobacteria Coxiella burnetii RSA 493 Cb
Gammaproteobacteria Escherichia coli O157:H7 Ec
Gammaproteobacteria Francisella tularensis subsp. tularensis Schu 4 Ft
Gammaproteobacteria Salmonella enterica serovar Typhi Ty2 Se
Gammaproteobacteria Salmonella typhimurium LT2 St
Gammaproteobacteria Shigella flexneri 2a str. 301 Sf
Gammaproteobacteria Vibrio cholerae O1 biovar eltor str. N16961 Vc
Gammaproteobacteria Yersinia pestis CO92 Yp
Gammaproteobacteria Yersinia pseudotuberuculosis IP32953 Yptb
  1. Strains of select agents (CDC category A and B bacteria) assigned to the target group in profile searches. Genomes sequences from some select agents were unavailable at the time (Clostridium botulinum and Chlamydia psittaci) and the toxin-producing strains of Staphylococcus aureus and Clostridium perfringens were excluded from the searches. Where multiple strains had been sequenced (such as for Bacillus anthracis and Yersinia pestis), a single representative strain was selected so that results were not skewed to favor species with multiple entries.
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