From: Analysis of recent segmental duplications in the bovine genome
Repeat | Duplications | 20-kb flanks | Genome | Enrichment ratio in duplication content | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 | Length | Count | Ave. Len. | Length% | Count/ 1 Mb | Length | Count | Ave. Len. | Length% | Count/ 1 Mb | Length | Count | Ave. Len. | Length% | Count/ 1 Mb | Length% | Count/ 1 Mb | Ave. Len. |
DNA | 505,659 | 2,777 | 182 | 1.09% | 6.01 | 281,144 | 1,599 | 176 | 1.62% | 9.20 | 56,383,709 | 304,851 | 185 | 1.93% | 10.45 | 0.57** | 0.58 | 0.98 |
LINE | 10,138,094 | 23,014 | 441 | 21.95% | 49.82 | 3,993,714 | 10,320 | 387 | 22.99% | 59.40 | 624,600,656 | 1,655,642 | 377 | 21.41% | 56.74 | 1.03* | 0.88 | 1.17 |
SINE | 5,870,448 | 26,627 | 220 | 12.71% | 57.64 | 2,699,548 | 12,975 | 208 | 15.54% | 74.68 | 464,030,104 | 2,203,064 | 211 | 15.90% | 75.50 | 0.80** | 0.76 | 1.05 |
LTR | 1,565,238 | 6,322 | 248 | 3.39% | 13.68 | 661,698 | 2,893 | 229 | 3.81% | 16.65 | 99,886,031 | 444,168 | 225 | 3.42% | 15.22 | 0.99 | 0.90 | 1.10 |
Satellite | 143,866 | 49 | 2,936 | 0.31% | 0.11 | 22,946 | 53 | 433 | 0.13% | 0.31 | 4,749,093 | 3,626 | 1,310 | 0.16% | 0.12 | 1.91* | 0.85 | 2.24 |
Simple | 214,338 | 4,972 | 43 | 0.46% | 10.76 | 88,930 | 1,999 | 44 | 0.51% | 11.51 | 14,261,600 | 343,825 | 41 | 0.49% | 11.78 | 0.95 | 0.91 | 1.04 |
Low complexity | 169,741 | 4,390 | 39 | 0.37% | 9.50 | 80,640 | 2,050 | 39 | 0.46% | 11.80 | 14,280,594 | 370,243 | 39 | 0.49% | 12.69 | 0.75** | 0.75 | 1.00 |
Other | 100,574 | 1,263 | 80 | 0.22% | 2.73 | 63,019 | 793 | 79 | 0.36% | 4.56 | 8,582,076 | 105,321 | 81 | 0.29% | 3.61 | 0.74 | 0.76 | 0.98 |
Total repeat | 18,707,958 | 69,414 | 270 | 40.50% | 150.26 | 7,891,639 | 32,682 | 241 | 45.42% | 188.11 | 1,286,773,863 | 5,430,740 | 237 | 44.10% | 186.11 | 0.92 | 0.81 | 1.14 |
Total analyzed | 46,196,844 | 138,828 | Â | Â | Â | 17,373,955 | 65,364 | Â | Â | Â | 2,917,958,192 | 10,861,480 | Â | Â | Â | Â | Â | Â |