Table 4 FISH characterization of Predicted Segmental Duplication
From: Analysis of recent segmental duplications in the bovine genome
No | Type | BAC | Genomic Coordinates | FISH Results | Genes | Location |
|---|---|---|---|---|---|---|
1 | Both | 109B15 | chr3:31163855-31372136 | Dup intra | BCAS2 | Pericentromeric |
2 | Both | 508O4 | chr3:99917302-100113132 | Single | SCP2 | NA |
3 | Both | 107O12 | chr4:102574988-102800832 | Dup inter | SLC23A2 | Telomeric |
4 | Both | 232G14 | chr5:107677204-107842367 | No results | KLRF1 | NA |
5 | Both | 230B1 | chr5:109254775-109460758 | Dup intra | no gene | Telomeric |
6 | Both | 410D11 | chr5:40136577-40302384 | Dup intra | no gene | Interstitial |
7 | Both | 154H9 | chr5:47523133-47830066 | Dup inter &Dup intra | LYZ1 | Interstitial |
8 | Both | 170G20 | chr6:6086819-6350887 | Dup intra | PDE5A | Pericentromeric |
9 | Both | 453M23 | chr6:6418121-6667425 | Dup intra | MGC134093 | Pericentromeric |
10 | Both | 303B2 | chr7:2221666-2410963 | Dup intra | ZFP2 | Pericentromeric |
11 | Both | 27N13 | chr9:72578833-72767038 | Dup intra | STX7 | Interstitial |
12 | Both | 460I2 | chr10:84431632-84620341 | Dup intra | MED6 | Interstitial |
13 | Both | 194H8 | chr11:46793969-47036106 | Dup intra | no gene | Interstitial |
14 | Both | 445I3 | chr12:85207002-85379077 | Dup intra | Tel | Telomeric |
15 | Both | 162G14 | chr13:16282432-16506351 | Dup intra | IL2RA | Interstitial |
16 | Both | 512C3 | chr13:29199709-29453354 | Dup intra | NMT2 | Interstitial |
17 | Both | 471B24 | chr18:58267050-58503186 | Dup intra | ZNF | Interstitial |
18 | Both | 306H19 | chr19:40075431-40253104 | No results | NM_006310 | NA |
19 | Both | 500F22 | chr19:42649170-42786581 | Dup intra | KRTRP | Pericentromeric |
20 | Both | 277E6 | chr27:6257023-6444256 | No results | BTN3A3 | NA |
21 | Both | 412A22 | chr29:8616714-8796296 | No results | TMEM135 | NA |
22 | Both | 64B3 | chrX:17312915-17514658 | Dup intra | no gene | Pericentromeric |
23 | Both | 250G12 | chrX:24170707-24419693 | Dup intra | VAMP7 | Pericentromeric |
24 | Both | 213C22 | chrX:31835480-32033216 | Dup intra | no gene | Pericentromeric |
25 | Both | 13B5 | chrX:53583006-53778536 | Single | no gene | NA |
26 | Both | 176G5 | chrX:56052875-56258742 | Dup intra | CSNK1B | Interstitial |
27 | Both | 476D12 | chrX:71108517-71271350 | Single | MAGEB18 | NA |
28 | Both | 431K8 | chrX:80676183-80893001 | Dup intra | GEMIN8 | Telomeric |
29 | Both | 29P20 | chrX:85621779-86016472 | Dup intra | ZNF | Telomeric |
30 | Both | 190O6 | chrUn.004.137:11823-223496 | Dup intra | IFITM1 | Interstitial |
31 | Both | 272A17 | chrUn.004.17:246225-650728 | Dup intra | CYSLTR1, MARCH5 | Interstitial |
32 | Both | 417D14 | chrUn.004.32:368390-592637 | Single | ZXDA | NA |
33 | Both | 147N16 | chrUn.004.37:2-215660 | Single | OR7A5 | NA |
34 | WSSD | 437P5 | chr5:78220396-78401696 | Single | no gene | NA |
35 | WSSD | 154G22 | chr6:116004945-116244550 | Dup intra | LDB2 | Telomeric |
36 | WSSD | 114C16 | chr13:10828181-11062504 | Dup intra | no gene | Interstitial |
37 | WSSD | 156M23 | chr16:50843873-51041572 | Dup intra | no gene | Interstitial |
38 | WSSD | 82C14 | chr20:3586174-3798411 | Dup intra | NM_033644 | Pericentromeric |
39 | WSSD | 77E4 | chr21:21099409-21300561 | Dup intra | no gene | Interstitial |
40 | WSSD | 90O14 | chr21:64173842-64394464 | No results | no gene | NA |
41 | WSSD | 23F3 | chr24:6824971-6986816 | Single | no gene | NA |
42 | WSSD | 104N21 | chr28:13010789-13201901 | Dup intra | no gene | Interstitial |
43 | WSSD | 3M17 | chrX:60292098-60448656 | Single | ALAS2 | NA |
44 | WSSD | 129M19 | chrUn.004.1055:2-52361 | Dup intra | no gene | Heterochromatin |
45 | WSSD | 400H20 | chrUn.004.1612:55-32829 | Dup intra | no gene | Heterochromatin |
46 | WGAC (< 94%) | 210P15 | chr13:37614994-37864888 | Dup intra | SLC6A9 | Telomeric |