Table 5 FISH comparison of two bovine genome assemblies
From: Analysis of recent segmental duplications in the bovine genome
No | Type | BAC | Genomic Coordinates | Genes | Location | FISH | Btau_4.0 | UMD2 | Support |
|---|---|---|---|---|---|---|---|---|---|
1 | WGAC | 29M8 | chr1:133744175-133954795 | no gene | Telomeric | NYN | NNY | NYN | UMD2 |
2 | WGAC | 388F24 | chr2:132507168-132702161 | CLIC4 | Telomeric | NYN | NYY | NYN | UMD2 |
3 | WGAC | 388H21 | chr3:63168745-63555485 | SSX2IP | Interstitial | NYN | NNY | NYN | UMD2 |
4 | WGAC | 11L7 | chr4:68544767-68768755 | no gene | NA | NA | NYY | YNN | NA |
5 | WGAC | 419I3 | chr5:50034725-50202046 | no gene | Interstitial | NYN | NYY | YNN | Btau_4.0 |
6 | WGAC | 518J9 | chr5:73679193-73890817 | APPL2 | NA | YNN | NNY | YNN | UMD2 |
7 | WGAC | 457K23 | chr6:77152427-77315213 | no gene | NA | YNN | NNY | YNN | UMD2 |
8 | WGAC | 512L10 | chr9:99288981-99490065 | no gene | NA | YNN | NYY | YNN | UMD2 |
9 | WGAC | 526E10 | chr12:7697603-7874322 | no gene | Pericentromeric | NYN | NYY | NYN | UMD2 |
10 | WGAC | 6B15 | chr13:47237506-47492899 | SLC23A2 | Telomeric | NYN | NNY | NYN | UMD2 |
11 | WGAC | 42E18 | chr19:43869525-44087448 | ATP6V0A1 | Interstitial | NYN | NYY | NYN | UMD2 |
12 | WGAC | 249A18 | chr22:40655172-40778725 | no gene | NA | YNN | NYN | YNN | UMD2 |
13 | WGAC | 474H10 | chr25:40607173-40778447 | ACTB | Telomeric | NNY | NNY | YNN | Btau_4.0 |