Table 1 Summary of parasitome, signal peptide-encoding and plant or microbe-like H. glycines genes.
From: Sequence mining and transcript profiling to explore cyst nematode parasitism
H. glycines contigs | Contigs | Probesets | Differentially expressed probesets total (up/downregulated)** | |||||
|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | overall life cycle | egg/infJ2 | infJ2/parJ2 | parJ2/J3 | J3/J4 | J4/F |
Secretory protein coding* | 633 | 686 | 646 | 337 (213/124) | 335 (186/149) | 224 (55/169) | 69 (41/28) | 136 (41/95) |
H. glycines parasitome | 46 | 62 | 62 | 39 (34/5) | 34 (30/4) | 34 (0/34) | 2 (0/2) | 3 (0/3) |
Plant-like | 29 | 30 | 18 | 2 (0/2) | 4 (4/0) | 1 (1/0) | 0 | 2 (0/2) |
Phytomicrobe-like | 41 | 43 | 28 | 16 (9/7) | 7 (5/2) | 3 (1/2) | 5 (5/0) | 3 (1/2) |
Soil microbe-like | 33 | 40 | 25 | 11 (4/7) | 7 (4/3) | 3 (1/2) | 0 | 4 (4/0) |
Other microbe-like | 53 | 63 | 39 | 11 (5/6) | 14 (11/3) | 5 (2/3) | 0 | 5 (0/5) |