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Table 1 Summary of parasitome, signal peptide-encoding and plant or microbe-like H. glycines genes.

From: Sequence mining and transcript profiling to explore cyst nematode parasitism

H. glycines contigs Contigs Probesets Differentially expressed probesets total (up/downregulated)**
    overall life cycle egg/infJ2 infJ2/parJ2 parJ2/J3 J3/J4 J4/F
Secretory protein coding* 633 686 646 337 (213/124) 335 (186/149) 224 (55/169) 69 (41/28) 136 (41/95)
H. glycines parasitome 46 62 62 39 (34/5) 34 (30/4) 34 (0/34) 2 (0/2) 3 (0/3)
Plant-like 29 30 18 2 (0/2) 4 (4/0) 1 (1/0) 0 2 (0/2)
Phytomicrobe-like 41 43 28 16 (9/7) 7 (5/2) 3 (1/2) 5 (5/0) 3 (1/2)
Soil microbe-like 33 40 25 11 (4/7) 7 (4/3) 3 (1/2) 0 4 (4/0)
Other microbe-like 53 63 39 11 (5/6) 14 (11/3) 5 (2/3) 0 5 (0/5)
  1. *As defined in Methods
  2. **FDR 5%