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Table 1 Enterobacteriaceae species and strains represented in this study, with their Rhs gene complement (excluding pseudogenes and gene relics).

From: Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement

Genus Species Strain GenBank Accession Number † Rhs complement by clade:    
     I II III IV V VI Total  
Citrobacter rodentium ICC168 (WTSI) 5 0 0 0 1 0 6 *
Citrobacter koseri BAA-895 CP000822 0 0 0 0 0 0 0  
Citrobacter youngae ATCC 29220 NZ_ABWL00000000 2 0 0 1 0 0 3 *
Dickeya dadantii 3937 (ASAP) 0 0 0 2 1 0 3 *
Enterobacter sakazakii ATCC-BAA-894 CP000783 0 0 2 0 0 0 2 *
Enterobacter tasmanensis Et1/99 NC_010694 0 1 2 0 0 0 3 *
Enterobacter sp. 638 CP000653 0 0 0 0 0 0 0  
Erwinia amylovora Ea273 (WTSI) 0 3 1 0 0 0 4 *
Erwinia carotovora ATCC BAA-672 BX950851 0 0 0 2 1 0 3 *
Escherichia albertii TW07627 NZ_ABKX00000000 1 0 0 0 1 0 2 *
Escherichia coli 536 NC_008253 0 0 0 0 0 0 0  
Escherichia coli APEC_01 NC_008563 0 0 0 0 0 0 0  
Escherichia coli ATCC8739 NC_010468 5 0 0 1 0 0 6 *
Escherichia coli CFT073 NC_004431 0 0 0 0 0 0 0  
Escherichia coli E24377A NC_009801 6 0 0 1 0 0 7  
Escherichia coli EC0127_H6_E2348.69 NC_011601 0 0 0 0 0 0 0  
Escherichia coli EC0157_EC4115 NC_011353 6 0 0 1 0 0 7  
Escherichia coli EC0157_H7_EDL933 AE005174 6 0 0 1 0 0 7  
Escherichia coli EC0157_H7_Sakai NC_002695 6 0 0 1 0 0 7 *
Escherichia coli HS NC_009800 3 0 0 0 0 0 3  
Escherichia coli K12_MG1655 NC_010473 4 0 0 0 0 0 4 *
Escherichia coli SE11 NC_011415 6 0 0 1 0 0 7  
Escherichia coli SMS.3.5 NC_010498 0 0 0 0 0 0 0  
Escherichia coli UTI89 NC_007946 0 0 0 0 0 0 0  
Escherichia fergusonii ATCC 35469T CU928158 0 0 1 0 0 0 1 *
Klebsiella pneumoniae MGH 78578 CP000647 0 0 0 0 0 0 0  
Klebsiella sp. 342 CP000964 0 0 0 0 0 0 0  
Photorhabdus luminescens laumondii BX470251 0 1 0 1 1 0 3 *
Photorhabdus asymbiotica ATCC43949 FM162591 0 1 0 1 1 0 3 *
Proteus mirabilis H14320 AM942759 0 1 0 0 1 0 2 *
Salmonella enterica Agona_SL483 NC_011149 1 0 0 0 0 0 1 *
Salmonella enterica Gallinarum_287.91 AM933173 1 1 0 0 0 0 2 *
Salmonella enterica Cholerasuis AE017220 0 0 1 0 0 0 1 *
Salmonella enterica Dublin_CT_02021853 NC_011205 0 0 1 0 0 0 1  
Salmonella enterica Heidelberg_SL476 NC_011083 0 0 1 0 0 0 1  
Salmonella enterica Paratyphi_A_AKU_12601 CP000026 0 0 1 0 0 0 1 *
Salmonella enterica PT4_P125109 NC_011294 0 0 1 0 0 0 1 *
Salmonella enterica Schwarzengrund_CVM19633 NC_011094 0 1 0 0 0 0 1  
Salmonella enterica typhimurium LT2 AE006468 0 1 0 0 0 0 1 *
Salmonella enterica typhi CT18 AL513382 0 1 1 0 0 0 2 *
Salmonella enterica typhi Ty2 AE014613 0 1 0 0 0 0 1 *
Salmonella enterica Newport_SL254 NC_011080 0 1 0 0 0 0 1  
Salmonella enterica Paratyphi_B_SPB7 NC_010102 0 0 0 0 0 0 0  
Salmonella enterica arizonae 62_z4.z23 NC_010067 0 0 0 0 0 0 0  
Salmonella bongori ATCC 43975 (WTSI) 1 0 0 0 1 0 2 *
Serratia proteamaculans 568 CP000826 0 0 0 0 0 0 0  
Serratia marcescens Db11 (WTSI) 0 1 1 0 0 0 2 *
Shigella sonnei Ss046 CP000038 3 0 0 1 0 0 4 *
Shigella boydii CDC_3083.94 NC_010658 3 0 0 0 0 0 3  
Shigella boydii Sb227 NC_007613 3 0 0 0 0 0 3 *
Shigella dysenteriae Sd197 NC_007606 3 0 0 0 0 0 3 *
Shigella flexneri 2a_2457T AE014073 0 0 1 0 0 0 1  
Shigella flexneri 5_8401 CP000266 0 0 1 0 0 0 1 *
Sodalis glossinidius morsitans NC_007712 0 0 0 0 0 0 0  
Yersinia pestis C092 AL590842 0 1 0 0 1 1 3 *
Yersinia pseudotuberculosis IP32953 BX936398 0 1 0 0 1 2 4 *
Yersinia pseudotuberculosis YAPI pathogenicity island CAF28563 0 1 0 0 0 0 1 *
Yersinia enterocolitica 8081 AM286415 0 0 0 0 0 0 0  
Yersinia bercovieri ATCC43970 NZ_AALC00000000 0 0 0 0 0 0 0  
Yersinia frederiksenii ATCC33641 NZ_AALE00000000 0 0 0 0 0 0 0  
Yersinia intermedia ATCC29909 NZ_AALF00000000 0 0 0 0 0 0 0  
Yersinia mollaretti ATCC43969 NZ_AALD00000000 0 0 0 0 0 0 0  
  1. Note: An asterisk * signifies that a given genome sequence was used in the global phylogenetic analysis (see Methods).
  2. All sequences are deposited in GenBank, either in finished or draft condition, except for those sequences marked with a cross †; these are publicly available from the Wellcome Trust Sanger Institute (WTSI) or University of Wisconsin-Madison (ASAP).