Table 1 Enterobacteriaceae species and strains represented in this study, with their Rhs gene complement (excluding pseudogenes and gene relics).
From: Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement
Genus | Species | Strain | GenBank Accession Number †| Rhs complement by clade: |  |  |  | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | I | II | III | IV | V | VI | Total | Â |
Citrobacter | rodentium | ICC168 | (WTSI) | 5 | 0 | 0 | 0 | 1 | 0 | 6 | * |
Citrobacter | koseri | BAA-895 | CP000822 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Citrobacter | youngae | ATCC 29220 | NZ_ABWL00000000 | 2 | 0 | 0 | 1 | 0 | 0 | 3 | * |
Dickeya | dadantii | 3937 | (ASAP) | 0 | 0 | 0 | 2 | 1 | 0 | 3 | * |
Enterobacter | sakazakii | ATCC-BAA-894 | CP000783 | 0 | 0 | 2 | 0 | 0 | 0 | 2 | * |
Enterobacter | tasmanensis | Et1/99 | NC_010694 | 0 | 1 | 2 | 0 | 0 | 0 | 3 | * |
Enterobacter | sp. | 638 | CP000653 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Erwinia | amylovora | Ea273 | (WTSI) | 0 | 3 | 1 | 0 | 0 | 0 | 4 | * |
Erwinia | carotovora | ATCC BAA-672 | BX950851 | 0 | 0 | 0 | 2 | 1 | 0 | 3 | * |
Escherichia | albertii | TW07627 | NZ_ABKX00000000 | 1 | 0 | 0 | 0 | 1 | 0 | 2 | * |
Escherichia | coli | 536 | NC_008253 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Escherichia | coli | APEC_01 | NC_008563 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Escherichia | coli | ATCC8739 | NC_010468 | 5 | 0 | 0 | 1 | 0 | 0 | 6 | * |
Escherichia | coli | CFT073 | NC_004431 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Escherichia | coli | E24377A | NC_009801 | 6 | 0 | 0 | 1 | 0 | 0 | 7 | Â |
Escherichia | coli | EC0127_H6_E2348.69 | NC_011601 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Escherichia | coli | EC0157_EC4115 | NC_011353 | 6 | 0 | 0 | 1 | 0 | 0 | 7 | Â |
Escherichia | coli | EC0157_H7_EDL933 | AE005174 | 6 | 0 | 0 | 1 | 0 | 0 | 7 | Â |
Escherichia | coli | EC0157_H7_Sakai | NC_002695 | 6 | 0 | 0 | 1 | 0 | 0 | 7 | * |
Escherichia | coli | HS | NC_009800 | 3 | 0 | 0 | 0 | 0 | 0 | 3 | Â |
Escherichia | coli | K12_MG1655 | NC_010473 | 4 | 0 | 0 | 0 | 0 | 0 | 4 | * |
Escherichia | coli | SE11 | NC_011415 | 6 | 0 | 0 | 1 | 0 | 0 | 7 | Â |
Escherichia | coli | SMS.3.5 | NC_010498 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Escherichia | coli | UTI89 | NC_007946 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Escherichia | fergusonii | ATCC 35469T | CU928158 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | * |
Klebsiella | pneumoniae | MGH 78578 | CP000647 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Klebsiella | sp. | 342 | CP000964 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Photorhabdus | luminescens | laumondii | BX470251 | 0 | 1 | 0 | 1 | 1 | 0 | 3 | * |
Photorhabdus | asymbiotica | ATCC43949 | FM162591 | 0 | 1 | 0 | 1 | 1 | 0 | 3 | * |
Proteus | mirabilis | H14320 | AM942759 | 0 | 1 | 0 | 0 | 1 | 0 | 2 | * |
Salmonella | enterica | Agona_SL483 | NC_011149 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | * |
Salmonella | enterica | Gallinarum_287.91 | AM933173 | 1 | 1 | 0 | 0 | 0 | 0 | 2 | * |
Salmonella | enterica | Cholerasuis | AE017220 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | * |
Salmonella | enterica | Dublin_CT_02021853 | NC_011205 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | Â |
Salmonella | enterica | Heidelberg_SL476 | NC_011083 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | Â |
Salmonella | enterica | Paratyphi_A_AKU_12601 | CP000026 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | * |
Salmonella | enterica | PT4_P125109 | NC_011294 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | * |
Salmonella | enterica | Schwarzengrund_CVM19633 | NC_011094 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | Â |
Salmonella | enterica | typhimurium LT2 | AE006468 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | * |
Salmonella | enterica | typhi CT18 | AL513382 | 0 | 1 | 1 | 0 | 0 | 0 | 2 | * |
Salmonella | enterica | typhi Ty2 | AE014613 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | * |
Salmonella | enterica | Newport_SL254 | NC_011080 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | Â |
Salmonella | enterica | Paratyphi_B_SPB7 | NC_010102 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Salmonella | enterica | arizonae 62_z4.z23 | NC_010067 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Salmonella | bongori | ATCC 43975 | (WTSI) | 1 | 0 | 0 | 0 | 1 | 0 | 2 | * |
Serratia | proteamaculans | 568 | CP000826 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Serratia | marcescens | Db11 | (WTSI) | 0 | 1 | 1 | 0 | 0 | 0 | 2 | * |
Shigella | sonnei | Ss046 | CP000038 | 3 | 0 | 0 | 1 | 0 | 0 | 4 | * |
Shigella | boydii | CDC_3083.94 | NC_010658 | 3 | 0 | 0 | 0 | 0 | 0 | 3 | Â |
Shigella | boydii | Sb227 | NC_007613 | 3 | 0 | 0 | 0 | 0 | 0 | 3 | * |
Shigella | dysenteriae | Sd197 | NC_007606 | 3 | 0 | 0 | 0 | 0 | 0 | 3 | * |
Shigella | flexneri | 2a_2457T | AE014073 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | Â |
Shigella | flexneri | 5_8401 | CP000266 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | * |
Sodalis | glossinidius | morsitans | NC_007712 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Yersinia | pestis | C092 | AL590842 | 0 | 1 | 0 | 0 | 1 | 1 | 3 | * |
Yersinia | pseudotuberculosis | IP32953 | BX936398 | 0 | 1 | 0 | 0 | 1 | 2 | 4 | * |
Yersinia | pseudotuberculosis | YAPI pathogenicity island | CAF28563 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | * |
Yersinia | enterocolitica | 8081 | AM286415 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Yersinia | bercovieri | ATCC43970 | NZ_AALC00000000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Yersinia | frederiksenii | ATCC33641 | NZ_AALE00000000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Yersinia | intermedia | ATCC29909 | NZ_AALF00000000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |
Yersinia | mollaretti | ATCC43969 | NZ_AALD00000000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Â |