Comparative analysis of catfish BAC end sequences with the zebrafish genome

BMC Genomics

Table 2 Distribution of comparatively anchored BAC clones using protein encoding gene sequences only.

Zebrafish chromosome	Chromosome size (Mb)	No. of protein encoding genes*	No. of tBLASTx hits	Hits to unique genes	Unique gene hits per Mb	No. of contigs with single gene hits	No. of contigs with multiple gene hits	No. putative micro-syntenies
1	56.2	818	205	123	1.83	75	17	13
2	54.4	875	194	133	2.13	85	15	13
3	62.9	975	196	127	1.75	72	18	13
4	42.6	743	221	130	2.77	78	16	9
5	70.4	1,173	340	224	2.74	103	35	21
6	59.2	818	232	151	2.31	85	22	18
7	70.3	990	283	191	2.33	80	34	25
8	56.5	864	196	128	1.93	65	22	14
9	51.5	700	212	133	2.17	61	21	16
10	42.4	670	150	87	1.72	51	12	9
11	44.6	627	161	121	2.26	67	16	10
12	47.5	636	177	114	2.21	72	14	7
13	53.5	744	200	113	1.96	67	21	14
14	56.5	701	197	113	1.77	84	11	7
15	46.6	688	177	125	2.25	68	14	8
16	53.1	773	181	124	2.02	77	14	10
17	52.3	715	180	115	1.99	62	19	13
18	49.3	749	193	121	2.23	47	22	21
19	46.2	780	233	134	2.58	86	21	16
20	56.5	1,053	277	171	2.48	76	30	19
21	46.1	721	163	117	2.28	63	14	10
22	39.0	959	178	113	2.59	50	19	16
23	46.4	669	204	121	2.24	68	18	13
24	40.3	513	117	78	1.71	47	8	7
25	32.9	597	199	114	3.04	65	19	14
Total/Average	1,277.2	19,551	5,066	3,221	2.21	1,754	472	336

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