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Table 4 Summary of 50 conserved syntenies identified by comparison of 95 mate-paired genes of channel catfish with genomic locations of those on the zebrafish draft genome sequence.

From: Comparative analysis of catfish BAC end sequences with the zebrafish genome

Catfish
BAC ID
SP6 hits T7 hits zebrafish Chr Chr location (Mb) Distance
(bp)
035I16 [GenBank:NP_001038735] [GenBank:XP_689146] 2 38.61 18,048
063L16 [GenBank:NP_001012377] [GenBank:NP_001092217] 2 19.25 48,679
026B05 [GenBank:XP_001921249] [GenBank:CAI20867] 3 31.82 4,418
098D05 [GenBank:CAI11873] [GenBank:NP_001038462] 4 1.82 301,470
007M06 [GenBank:XP_001333162] [GenBank:NP_571105] 5 5.46 379,579
028M04 [GenBank:XP_687685] [GenBank:NP_958867] 5 22.23 133,063
074L07 [GenBank:XP_001334912] [GenBank:XP_687570] 5 15.69 290,598
035N11 [GenBank:NP_001032187] [GenBank:NP_958882] 6 18.25 231,524
040J24 [GenBank:XP_686613] [GenBank:NP_991309] 6 7.37 443,524
077F04 [GenBank:NP_001034906] [GenBank:NP_001038813] 6 11.42 484,877
032F20 [GenBank:XP_691291] [GenBank:NP_001075159] 7 28.40 244,425
062B16 [GenBank:NP_001008651] [GenBank:NP_001017550] 7 15.05 222,416
075K10 [GenBank:NP_956505] [GenBank:NP_001070187] 7 13.34 268,455
103I21 [GenBank:NP_998033] [GenBank:NP_001159825] 7 22.34 293,845
047N13 [GenBank:XP_699919] [GenBank:XP_699627] 8 23.84 203,260
057N22 [GenBank:XP_001923800] [GenBank:NP_997066] 9 36.69 163,677
076H22 [GenBank:NP_001004563] [GenBank:XP_001921910] 9 13.84 313,352
105N24 [GenBank:NP_001122018] [GenBank:NP_997992.2] 9 27.37 268,271
056A23 [GenBank:NP_998295] [GenBank:NP_001103164] 10 7.50 486,745
068C21 [GenBank:NP_001019272] [GenBank:XP_001920077] 10 17.72 104,067
093K02 [GenBank:XP_001344325] [GenBank:XP_001919728] 10 41.67 152,479
096A14 [GenBank:NP_001120805] [GenBank:NP_997775] 11 10.02 980,276
010B15 [GenBank:NP_956715] [GenBank:NP_956756] 12 25.17 111,625
041B24 [GenBank:NP_001002607] [GenBank:XP_693784] 12 13.59 398,886
109K22 [GenBank:XP_001920588] [GenBank:XP_001920550] 12 25.55 449,096
018H11 [GenBank:NP_956915] [GenBank:NP_997743] 13 23.23 293,181
026C08 [GenBank:NP_001119869] [GenBank:NP_956611] 13 23.50 201,663
027E09 [GenBank:XP_001922173] [GenBank:XP_001921791] 14 0.22 574,761
103F19 [GenBank:NP_571477] [GenBank:XP_001919973] 14 22.90 256,143
022D09 [GenBank:NP_001096112] [GenBank:XP_684421] 15 29.14 418,219
059B20 [GenBank:XP_682817] [GenBank:XP_691794] 15 27.80 94,396
077H08 [GenBank:XP_001920240] [GenBank:NP_001070609] 15 6.05 339,215
004O03 [GenBank:NP_001020707] [GenBank:NP_001020642] 16 10.40 149,618
075M09 [GenBank:NP_001107266] [GenBank:NP_001082899] 16 8.30 120,355
104I08 [GenBank:NP_571871] [GenBank:NP_694503] 16 27.17 214,517
013P16 [GenBank:NP_001076304] [GenBank:NP_001038173] 18 18.65 366,849
042J20 [GenBank:NP_001037796] [GenBank:NP_001038370] 18 32.85 223,781
021L13 [GenBank:NP_001038343] [GenBank:XP_688911] 19 17.40 286,019
052N18 [GenBank:XP_001921158] [GenBank:NP_956134] 19 7.59 345,553
056A09 [GenBank:NP_001018463] [GenBank:NP_001038416] 19 13.46 122,217
065M02 [GenBank:XP_001922809] [GenBank:NP_001038686] 19 15.37 430,325
080O21 [GenBank:NP_956277] [GenBank:NP_571262] 19 17.06 389,643
086C16 [GenBank:XP_001340912] [GenBank:NP_001038562] 19 6.00 364,590
010H22 [GenBank:NP_998602] [GenBank:XP_001920851] 21 2.24 240,019
034I14 [GenBank:NP_001038838] [GenBank:NP_956334] 21 20.16 306,102
081J10 [GenBank:NP_001002411] [GenBank:NP_001073439] 21 22.12 277,818
099H22 [GenBank:NP_001076277] [GenBank:XP_699221] 22 7.03 115,754
053P11 [GenBank:NP_001002173] [GenBank:NP_001035137] 23 30.73 197,703
068O10 [GenBank:XP_001339131] [GenBank:XP_689922] 23 18.01 332,973
105H10 [GenBank:NP_001103636] [GenBank:NP_001098596] 23 33.36 274,318
Average      278,648