Table 1 Summary of disagreement among three measures: Inparanoid orthology, local synteny based orthology, and intron conservation ratio (ICR).
From: Identification of mammalian orthologs using local synteny
Orthology | ICR | Explanations |
|---|---|---|
Non-syntenic Inparanoid orthologs | ICR = 0 | RT miscalls (0.2%) Part of 1-many (1.0%) |
| Â | ICR > 0 | Loss of local synteny (1.3%) |
Syntenic non-Inparanoid orthologs | ICR ≥ 0.5 | RT miscalls (0.2%) Distant paralogs (2.1%) |
| Â | ICR < 0.5 | Distant paralogs (1.1%) |
Non-syntenic non-Inparanoid orthologs | ICR = 1 | Distant paralogs (2.2%) |