Sympatric ecological speciation meets pyrosequencing: sampling the transcriptome of the apple maggot Rhagoletis pomonella

Table 4 Sequences expressed primarily in larvae†.

Contig	Total reads	Larval reads	% L reads	Match	Annotation
Larval Cuticle Proteins
17158 [EZ133377], 24176 [EZ140395], 9309 [125528]	175	173	99	CG32400	Larval cuticular protein 65Ab1
17157 [EZ133376]	38	37	97	CG6956	Larval cuticular protein 65Ac
9308 [EZ125527], 9306 [EZ125525]	177	171	97	CG2044	Larval cuticular protein 4
22477 [EZ138696]	29	28	97	CG15515	Cuticle protein
11180 [EZ127399]	82	79	96	CG9070	Larval cuticular protein 2a
21675 [EZ137894], 24313 [EZ140532]	308	290	94	CG8697	Larval cuticle protein 2
17322 [EZ133541]	34	32	94	CG9077	Cuticular protein 47Ec
20182 [EZ136401]	95	83	87	CG8502	Cuticular protein 49Ac
Protein Digestion
23604 [EZ139823]	36	36	100	CG12385	theta-Trypsin
24013 [EZ140232]	48	46	96	CG12385	theta-Trypsin
10762 [EZ126981]	89	85	96	CG12385	theta-Trypsin
21083 [EZ137302]	54	49	91	CG17571	trypsin-like serum protease
9347 [EZ125566]	120	108	90	CG30028	gammaTrypsin
9544 [EZ125763]	79	70	89	CG12385	theta Trypsin
22598 [EZ138817]	20	17	85	CG12387	zeta Trypsin

†"Contig" is our assembly number followed by the GenBank TSA accession number, "total reads" is the total number of reads contributing to the contig, "larval reads" is the number of the total recovered from larvae, "%L" is the percent of reads from larvae, "Match" is the Celera Genome number of the best match with Drosophila melanogaster, and "Annotation" is a brief description of the match.

ISSN: 1471-2164