Table 2 Newly identified miRNAs in pig that are homologous to known miRNAs from other animal species.

ssc-miR-1a

UGGAAUGUAAAGAAGUAUGUA

317

gga, xtr, sme, odi

ssc-miR-1b

UGGAAUGUCGUGAAUUAUGGUC

22

gga, xtr, sme, odi, mmu, hsa

ssc-miR-1c

UGGAAUGUAAAGAAGUAUGUGA

72

sme, odi

ssc-let-7a

UGAGGUAGUAGGUUGUAUAGUU

80

hsa, mmu, rno, gga, dre, fru, tni, xtr, bta, sme, mdo, odi, cin, csa, mml, cfa

ssc-let-7b

UGAGGUAGUAGUUUGUGUAGUU

64

hsa, mmu, rno, gga, dre, fru, tni, xtr, bta, sme, mdo, odi, cin, csa, mml

ssc-let-7d

UGAGGUAGUUGGUUGUAUUGUU

32

hsa, mmu, rno, gga, dre, fru, tni, bta, mdo, odi, cin, csa, mml

ssc-let-7e

UGAGGUAGUAGGUUGUUUAGUU

63

hsa, mmu, rno, dre, fru, tni, xtr, bta, cin, mml, cfa

ssc-let-7g

UGAGGUAGUAGUUUGUACAGU

25

hsa, mmu, gga, dre, fru, tni, xtr, bta, mdo, mml, cfa

ssc-let-7h

UGAGGUAGUAAGUUGUGUUGUU

5

dre, fru, tni

ssc-let-7j

UGAGGUAGUAGAGUGCAGUAGUU

80

gga, fru, tni, dre, cfa

ssc-let-7k

UGAGGUAGUAGAUUGAAUAGUU

6

gga

ssc-miR-10a

UACCCCGUAGAUCCGAAUUUGUG

1

hsa, mmu, rno, dre, ggo, ppy, sla, age, ppa, xtr, bta, mdo, mml, mmu

ssc-miR-15a

UAGCAGCACGGAAUGGUUUGUG

2

hsa, mmu, gga, dre, age, ggo, mne, sla, ppa, lca, mml, ppy, ptr, lla, fru, tni, xtr, mdo, bta, cfa

ssc-miR-15c

AAGCAGCGCGUCAUGGUUUUC

4

dre, xtr

ssc-miR-16a

UAGCAGCACGUAAAUAUUGGUG

5

dre, xtr

ssc-miR-16b

UAGCAGCACGUAAAUAUUGGAG

5

dre, xtr

ssc-miR-16c

UAGCAGCACGUAAAUACUGGAG

4

dre, xtr

ssc-miR-17

CAAAGUGCUUACAGUGCAGGUA

2

dre, hsa, mmu, rno, gga, ggo, lca, age, ppa, ppy, ptr, mml, sla, lla, mne, fru, tni, xtr, bta, mdo, rno, cfa

ssc-miR-18a

UAAGGUGCAUCUAGUGCAGAUA

4

hsa, mmu, rno, gga, dre, bta, xtr

ssc-miR-18b

UAAGGUGCAUCUAGUGCAGUUA

5

gga, hsa, dre, bta, xtr, mmu, mml

ssc-miR-20a

UAAAGUGCUUAUAGUGCAGGUAG

10

hsa, mmu, rno, gga, dre, mml, bta, xtr

ssc-miR-20b

CAAAGUGCUCACAGUGCAGGUA

3

hsa, mmu, rno, gga, dre, mml, bta, xtr

ssc-miR-22a

AAGCUGCCAGCUGAAGAACUGU

1

dre, fru, tni

ssc-miR-22b

AAGCUGCCAGUUGAAGAGCUGU

5

dre, fru, tni

ssc-miR-23b

AUCACAUUGCCAGGGAUUACCAC

1

mmu, hsa, rno, gga, dre, ptr, ppy, ppa, fru, tni, xtr, bta, mdo, mml, cfa

ssc-miR-24a

UGGCUCAGUUCAGCAGGAACAG

3

xtr

ssc-miR-24b

UGGCUCAGUUCAGCAGGACAG

2

xtr

ssc-miR-25

CAUUGCACUUGUCUCGGCUGA

1

cel, cbr, dme, hsa, mmu, rno, dre, ggo, ppa, ppy, ptr, mml, lla, mne, fru, tni, xtr, bta, mdo, cfa

ssc-miR-26b

UUCAAGUAAUCCAGGAUAGGUU

84

hsa, mmu, rno, dre, bta, mml, cfa

ssc-miR-27b

UUCACAGUGGCUAAGUUCUGC

4

hsa, mmu, rno, gga, dre, fru, tni, bta, xtr, mdo, mml, cfa

ssc-miR-27c

UUCACAGUGGCUAAGUUCCAC

4

dre, fru, tni, xtr

ssc-miR-27d

UUCACAGUGGCUAAGUUCUUCA

4

dre

ssc-miR-27e

UUCACAGUGGCUAAGUUCAGUG

4

dre, fru, tni

ssc-miR-29a

CUAGCACCAUCUGAAAUCGGUU

6

hsa, mmu, rno, gga, dre, ggo, age, ppa, ppy, ptr, mml, sla, lla, mne, fru, tni, bta, xtr, mdo, cfa

ssc-miR-30a

UGUAAACAUCCUCGACUGGAAG

2

hsa, mmu, rno, gga, dre, mml, ptr, ggo, ppy, ppa, xtr, bta, mdo, cfa

ssc-miR-30b

UGUAAACAUCCUACACUCAGC

3

mmu, hsa, rno, gga, dre, mml, ptr, ggo, lla, mne, age, ppa, fru, tni, bta, xtr, cfa

ssc-miR-30d

UGUAAACAUCCCCGACUGGAAG

1

hsa, mmu, rno, gga, dre, ptr, ggo, mne, ppa, fru, tni, bta, xtr, mml, cfa

ssc-miR-30e

CUUUCAGUCGGAUGUUUACAGC

1

hsa, mmu, rno, gga, dre, xtr, bta, mml, cfa

ssc-miR-92a

UAUUGCACUCGUCCCGGCCUUG

2

hsa, dme, mmu, rno, dps, aga, dre, mml, xtr, ame, odi, cin, csa, mml, cfa

ssc-miR-92b

AAUUGCACUAGUCCCGGCCUGC

2

dme, dps, aga, hsa, xtr, mmu, rno, odi, cin, csa, mml, cfa

ssc-miR-93a

AAAGUGCUGUUCGUGCAGGUAG

5

xtr

ssc-miR-93b

AAGUGCUGUUCGUGCAGGUAG

5

xtr

ssc-miR-98

UGAGGUAGUAAGUUGUAUUGUU

5

hsa, mmu, rno, mml, ptr, ggo, ppy, age, ppa, xtr, bta, cfa

ssc-miR-99

AACCCGUAGAUCCGAUCUUGUG

2

hsa, mmu, rno, gga, mml, ptr, ggo, ppy, lla, mne, ppa, bta, mml, cfa, dre, xtr

ssc-miR-100

AACCCGUAAUUCCGAACUUGUG

3

hsa, dme, mmu, rno, gga, dps, aga, dre, ggo, age, ppa, ppy, ptr, mml, sla, lla, fru, tni, xtr, mdo, ame

ssc-miR-101a

UACAGUACUGUGAUAACUGAA

8

mmu, rno, dre, fru, tni, xtr

ssc-miR-101b

UACAGUACUAUGAUAACUGAAG

5

rno, mmu, dre, fru, tni

ssc-miR-106

AAAAGUGCUUAUAGUGCAGGUAGA

10

gga, xtr, bta

ssc-miR-106b

UAAAGUGCUGACAGUGCAGAU

1

mmu, hsa, rno, ggo, age, ppa, ppy, ptr, mml, sla, lla, mne, cfa

ssc-miR-124

UAAGGCACGCGGUGAAUGCCA

1

mmu, dme, hsa, cel, cbr, rno, gga, dps, ame, aga, dre, ggo, age, ppa, ppy, ptr, mml, lla, fru, tni, xtr, bmo, bta, sme, odi, cin, csa, cfa

ssc-miR-125c

UCCCUGAGACCCUAACUCGUGA

2

dre

ssc-miR-126

CAUUAUUACUUUUGGUACGCG

22

mmu, hsa, rno, gga, dre, fru, tni, bta, xtr, cin, csa, mml, cfa

ssc-miR-1297

UUCAAGUAAUUCAGGUG

20

hsa

ssc-miR-130a

CAGUGCAAUGUAAAAAGGGCAU

5

hsa, mmu, rno, gga, dre, mml, ggo, mne, ppa, xtr, mdo, cfa

ssc-miR-130c

CAGUGCAAUAUUAAAAGGGCAU

1

dre, xtr

ssc-miR-133a

UUGGUCCCCUUCAACCAGCUG

2

mmu, hsa, rno, gga, xla, dre, ggo, age, ppa, ppy, ptr, mml, sla, lla, mne, xtr, mdo, mmu

ssc-miR-133b

UUGGUCCCCUUCAACCAGCUA

2

mmu, hsa, gga, dre, rno, xtr, mml

ssc-miR-133c

UUUGGUCCCUUUCAACCAGCUA

2

gga, dre, xtr, mml

ssc-miR-133d

UUGGUCCCCUUCAACCAGCCGC

1

xtr

ssc-miR-141

UAACACUGUCUGGUAACGAUGC

1

hsa, mmu, rno, dre, mml, ggo, ppy, ppa, mdo, cin, csa

ssc-miR-142

CAUAAAGUAGAAAGCACUAC

7

hsa, bta, mmu, rno, gga, dre, fru, tni, xtr, mdo, mml, cfa

ssc-miR-142-3p

UGUAGUGUUUCCUACUUUAUGG

6

mmu, hsa, rno, gga, xtr, mml

ssc-miR-142a

CAUAAAGUAGAAAGCACUACU

3

dre, fru, tni

ssc-miR-143

UGAGAUGAAGCACUGUAGCUCG

14

hsa, dre, mmu, rno, ptr, ggo, ppy, lla, ppa, xtr, mdo, mml, cfa, cbr

ssc-miR-144

UACAGUAUAGAUGAUGUACU

6

mmu, hsa, rno, dre, ptr, ppy, mne, ppa, fru, tni, xtr, gga, mdo, mml, cfa

ssc-miR-146a

UGAGAACUGAAUUCCAUAGAUGG

2

mmu, hsa, rno, dre, mml, cfa

ssc-miR-146b

UGAGAACUGAAUUCCAUAGGCG

2

dre, hsa, gga, mmu, xtr, rno, mml, cfa

ssc-miR-181a

AACAUUCAACGCUGUCGGUGAG

5

mmu, hsa, rno, gga, dre, ggo, ppa, ptr, mml, sla, mne, ppy, lla, fru, bta, xtr, mdo, cfa, tni

ssc-miR-192

CUGACCUAUGAAUUGACAGCCAG

2

hsa, mmu, rno, dre, fru, tni, xtr, bta, mml, cfa

ssc-miR-194

UGUAACAGCAACUCCAUGUGG

3

mmu, hsa, rno, gga, dre, mml, ptr, ppy, ggo, mne, age, fru, tni, xtr, cfa

ssc-miR-197

UUCACCACCUUCUCCACCCAGC

1

hsa, ptr, ppy, mne, age, ppa, mmu, mml, cfa

ssc-miR-200a

UAACACUGUCUGGUAACGAUGU

1

hsa, mmu, rno, gga, dre, fru, tni, xtr, bta, mdo, mml

ssc-miR-204a

UUCCCUUUGUCAUCCUAUGCCU

2

tni

miR-204b

UUCCCUUUGUUAUCCUAUGCCU

1

tni, fru

ssc-miR-211

UUCCCUUUGUCAUCCUUCGCCU

2

mmu, hsa, rno, mml, ppy, mne, gga

ssc-miR-215

AUGACCUAUGAAUUGACAGAC

2

mmu, hsa, gga, mml, ptr, ppy, ggo, mne, rno

ssc-miR-320a

AAAAGCUGGGUUGAGAGGGCGA

1

hsa

ssc-miR-320b

AAAAGCUGGGUUGAGAGGGCAA

1

hsa

ssc-miR-320c

AAAAGCUGGGUUGAGAGGGU

1

hsa

ssc-miR-320d

AAAAGCUGGGUUGAGAGGA

1

hsa

ssc-miR-352

AGAGUAGUAGGUUGCAUAGUA

10

rno

ssc-miR-374a

UUAUAAUACAACCUGAUAAGU

1

hsa, mml, cfa

ssc-miR-378

ACUGGACUUGGAGUCAGAAGGC

11

hsa, mmu, rno, mml, cfa

ssc-miR-450a

UUUUGCGAUGUGUUCCUAAUAU

1

hsa, mmu, rno, mmu, mml, cfa

ssc-miR-451

AAACCGUUACCAUUACUGAGUUU

1

hsa, mmu, rno, dre, xtr, gga, mdo, mml

ssc-miR-455-3p

GCAGUCCAUGGGCAUAUACAC

1

hsa, mml

ssc-miR-499

UUAAGACUUGCAGUGAUGUUU

1

hsa, gga, rno, mmu, bta, dre, xtr, mml, cfa

ssc-miR-503

UAGCAGCGGGAACAGUACUGCAG

1

hsa, mmu, rno, mml, cfa

ssc-miR-739

AGGCCGAAGUGGAGAAGGGUU

3

dre

ssc-miR-891b

UGCAACUUACCUGAGUCAUUGA

1

hsa

ssc-miR-1224-3p

CCCCACCUCCUCUCUCCUCAG

1

hsa, ptr