|
Type of gene
|
ENCODE Sub-regions Analyzed
|
Conserved pTRRs in sub-region
|
Non-conserved pTRRs in sub-region
|
Base pairs in sub-region
|
|---|
|
All
|
5' UTR
|
71
|
46
|
99,440
|
|
All
|
3' UTR
|
15
|
12
|
382,329
|
|
All
|
Intergenic Proximal
|
61
|
163
|
2,429,196
|
|
All
|
Intergenic Distal
|
48
|
171
|
11,055,834
|
|
All
|
Intronic Proximal
|
173
|
457
|
8,903,959
|
|
All
|
Intronic Distal
|
55
|
122
|
6,462,925
|
|
All
|
Coding sequences
|
0
|
0
|
671,166
|
|
Developmental
|
Intergenic Proximal
|
20
|
22
|
392,692
|
|
Developmental
|
Intergenic Distal
|
5
|
20
|
1,636,075
|
|
Non-developmental
|
Intergenic Proximal
|
24
|
86
|
733,487
|
|
Non-developmental
|
Intergenic Distal
|
10
|
51
|
2,309,353
|
|
Non-gene Desert
|
Intergenic Distal
|
39
|
159
|
7,147,316
|
|
Gene Desert
|
Intergenic Distal
|
9
|
12
|
3,908,518
|
|
Gene Desert
|
Intergenic Proximal
|
0
|
3
|
75,000
|
|
Non-gene Desert
|
Intergenic proximal
|
61
|
160
|
2,354,196
|
- pTRRs partitioned to ENCODE defined regions and grouped as conserved versus non-conserved based on pTRR overlap with PhastCons Placental Mammal Conserved Elements, 28-way Multiz Alignment [43]. Gene type of all represents analysis of whole ENCODE region. Developmental genes represent regions flanking genes labeled with Gene Ontology term GO:0032502, while non-developmental genes were those that were not labeled with GO:0032502. Gene deserts were ENCODE intervals overlapping regions ≥500 kb without a Reference Sequence gene. Non-gene deserts were all sub-regions that did not overlap gene deserts. The "Base pairs in sub-region" column represents the sum of the genomic intervals represented by each type of sub-regions.
