BMC Genomics

Table 2 Percent homology between Xenopus tropicalis and human MMP proteins#.

From: Genome-wide identification of Xenopus matrix metalloproteinases: conservation and unique duplications in amphibians

MMP	H1	H2	H3	H7	H8	H9	H10	H11	H12	H13	H14	H15	H16	H17	H19	H20	H21	C22	H23	H24	H25	H26	H27	H28
X 1	51	42	54	48	52	36	51	32	51	53	38	38	40	36	33	46	28	50	25	41	36	39	49	33
X 2	44	80	44	49	43	48	44	38	42	48	32	24	32	30	30	40	27	44	27	32	32	39	38	29
X 3	48	38	50	50	47	33	47	33	46	46	36	36	37	31	30	43	27	45	26	37	31	41	42	31
X 7	54	54	55	51	53	49	53	35	55	55	44	45	46	38	36	51	36	53	29	47	39	43	54	41
X 9	37	50	40	41	38	57	40	34	37	41	25	24	26	26	32	34	24	38	32	23	30	37	34	27
X 9TH	38	49	40	38	40	59	41	36	37	42	25	25	31	24	32	35	24	40	31	24	30	38	35	30
X 11	34	34	37	36	33	34	35	62	31	32	39	38	39	39	33	33	31	33	32	40	40	36	33	30
X 13	46	45	49	46	49	38	51	34	43	67	38	42	38	35	33	45	29	48	26	39	34	40	49	31
X 14	38	35	38	41	36	33	37	38	39	38	77	60	57	36	34	37	27	38	26	56	38	35	35	34
X 15	41	22	42	43	38	25	41	38	40	40	59	69	55	38	37	38	27	38	26	53	42	37	35	36
X 16	41	34	38	41	39	31	40	36	39	40	56	57	87	36	35	38	26	39	30	67	38	36	35	32
X 17	35	32	37	38	35	24	36	37	36	36	37	38	35	70	34	36	27	34	25	37	47	37	33	31
X 18	55	47	53	48	52	36	50	34	48	51	38	40	39	36	35	43	29	50	28	41	34	41	50	33
X 19	36	37	36	37	33	34	37	33	35	37	38	38	38	34	60	35	34	35	25	40	35	37	37	35
X 20	45	41	47	46	44	36	47	33	44	45	39	39	38	36	32	70	30	44	25	39	36	35	42	35
X 21	30	23	30	38	30	19	31	29	32	29	28	26	24	26	28	29	59	29	25	25	27	31	27	28
X 23	28	29	24	24	23	33	22	28	24	24	26	27	32	25	22	24	27	25	60	32	26	24	22	25
X 24	40	34	41	42	40	27	41	39	41	39	54	56	69	36	35	38	26	38	30	84	38	35	37	34
X 25	36	33	34	37	38	31	35	37	36	34	39	42	40	50	35	32	30	34	29	41	49	35	30	31
X 26	53	54	55	48	53	51	53	36	53	59	46	44	46	38	38	54	36	53	28	48	38	40	55	39
X 28	34	34	34	35	31	30	33	31	33	33	35	37	35	32	35	34	30	31	29	36	32	36	29	56
X N1	34	29	35	40	34	27	36	31	35	32	30	31	30	26	33	33	24	35	27	29	27	38	31	30
X N2	56	56	56	54	57	48	56	37	54	57	44	44	47	38	42	54	36	53	33	46	40	41	53	40
X N3	30	21	30	36	28	18	31	29	29	30	26	27	27	23	28	28	52	29	26	25	27	31	29	30
X N4	49	40	51	47	48	35	51	34	49	48	38	39	40	35	32	46	28	50	27	42	34	39	49	31
X N5	47	40	51	44	45	35	50	33	47	48	36	38	39	34	31	45	29	48	27	41	32	40	46	32
X N6	28	30	28	27	29	34	29	30	28	29	28	31	30	25	30	29	26	28	44	32	29	30	27	32

#Comparison of X. tropicalis and human MMP protein sequences. Pair-wise comparisons were done to obtain the percent of identities between the MMPs from the two species. H1 ~ 28: human MMP1 ~ 28; C22: chicken MMP22; X 1 ~ 28, X 9TH, and X N1 ~ N6: Xenopus tropicalis MMP1 ~ 28, 9TH, and N1 ~ N6, respectively. The highlighted numbers with bold letters indicate homologies suggesting that X. tropicalis and human MMPs are homologs.

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ISSN: 1471-2164

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