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Table 1 Annotation of the mitochondrial genome of Crassostrea hongkongensis.

From: "Tandem duplication-random loss" is not a real feature of oyster mitochondrial genomes

Gene Position Size Codon Intergenic Nucleotides*
   Nucleotide Amino acids Start Stop  
cox1 1–1617 1617 538 ATA TAA 1
rrnL 3'half 1761–2472 712     143
cox3 2575–3438 864 287 ATA TAA 231
trnI 3439–3505 67     0
trnT 3506–3573 68     0
trnE 3595–3662 68     21
cob 3670–4875 1206 401 ATA TAA 130
trnD 4984–5052 69     108
cox2 5054–5755 702 233 ATG TAG 1
trnM 1 (ATG) 5777–5842 66     21
trnS 1 (AGN) 5846–5915 70     3
trnL 2 (UUR) 5931–5997 67     15
trnM 2 (ATG) 6065–6129 65     67
trnS 2 (UCN) 6137–6204 68     7
trnP 6383–6451 69     178
rrnS 1 6452–7525 1074     0
trnK 1 7526–7594 69     0
trnC 7624–7691 68     29
trnQ 1 (CAA) 7709–7777 69     17
rrnL 5'half 7780–8384 605     1
trnN 8443–8508 66     58
rrnS 2 8509–9698 1190     0
trnY 9699–9764 66     0
atp6 9770–10453 684 227 ATG TAG 5
trnG 10966–11035 70     512
trnV 11644–11716 73     608
nad2 11759–12757 999 332 ATG TAG 42
trnR 12792–12858 67     34
trnH 12919–12983 65     60
nad4 12986–14335 1350 449 ATA TAG 2
trnK 2 (AAA) 14343–14417 75     7
nad5 14419–16089 1671 556 ATG TAA 1
nad6 16101–16576 476 158 ATT TA- 11
trnQ 2 (CAA) 16610–16678 69     33
nad3 16684–17034 351 116 ATG TAG 5
trnL 1 (CUN) 17070–17135 66     35
trnF 17171–17238 68     35
trnA 17259–17325 67     20
nad1 17331–18266 936 311 ATG TAA 5
nad4L 18270–18549 280 93 ATG T- 3
trnW 18550–18618 69 22    0
  1. "-" indicates termination codons completed via polyadenylation.
  2. Underlined genes correspond to a segment missing in Yu et al.' sequence due to a sequencing artifact.