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Table 4 Primers used to amplify fragments of Crassostrea hongkongensis mitochondrial genome.

From: "Tandem duplication-random loss" is not a real feature of oyster mitochondrial genomes

Order

Primer name

Sequence (5'-3')

Length

position

Product size (bp)

1*

HK-4343F

TTAGAGTTCCGTTTCACCCG

20

4343

2470, 4617

 

HK-6812R

CTTTCGCTTCAATTTAGTTAGT

22

6812, 8959

 

2*

HK-6569F

GGTTCTGGTATAATGTTAGCT

21

6569, 8716

824, 2971

 

HK-7392R

ATTACTCTCTTTTTACTCCC

20

7392, 9539

 

3*

HK-9412F

CTAGGTCAGGTCGAAGTGCT

20

7265, 9412

1016, 3163

 

HK-10427R

AGAGCACAGGTGTTGGGTGA

20

10427

 

4

HK-5807F

GTCTCATAATCCGAAAGTGGTT

22

5807

2658

 

HK-8464R

CTTATACTTGGGCTACTTTCTT

22

8464

 

5

HK-8138F

GGTGCTCACTAAATCAGTATGT

22

8138

1905

 

HK-10043R

ATGAAGATAGTGACGGAAACCC

22

10043

 
  1. *Primer pairs from Yu et al. (2008). Because one or both of the primers are located in the duplicated rrnS gene, two fragments are expected but only the shorter one is actually amplified.