Skip to main content

Table 1 List of gene set regulated by IL-6 in PC12 cells

From: Expression profiling and Ingenuity biological function analyses of interleukin-6- versus nerve growth factor-stimulated PC12 cells

Gene

 

Accession no.

Fold change

Subcellular location

Cytokines

    

   chemokine ligand 13

CXCL13

AF044196

43

Extracellular Space

   chemokine ligand 10

CXCL10

U17035

7

Extracellular Space

Enzymes

    

   cytochrome P450, 4f16

CYP4F16

U39207

424

Cytoplasm

   ceruloplasmin

CP

AF202115

191

Extracellular Space

   peptidyl arginine deiminase, type III

PADI3

D88034

142

Cytoplasm

   acyl-CoA synthetase, member 1

ACSL1

D90109

102

Cytoplasm

   transglutaminase 1

TGM1

M57263

93

Plasma Membrane

   nitric oxide synthase 2A

NOS2A

U03699

58

Cytoplasm

   ornithine carbamoyltransferase

OTC

M11266

43

Cytoplasm

   Similar to Lysophospholipase

LOC374569

AB009372

37

Unknown

   trehalase

TREH

AF038043

35

Plasma Membrane

   kynureninase

KYNU

U68168

25

Cytoplasm

   nitric oxide synthase 3

NOS3

AJ011115

21

Cytoplasm

   glycine amidinotransferase

GATM

U07971

14

Cytoplasm

   guanine nucleotide binding protein, alpha z

GNAZ

U77485

14

Plasma Membrane

   ST6 galactosamide alpha-2,6-sialyltranferase 1

ST6GAL1

M83143

14

Cytoplasm

   aldo-keto reductase, 1C1

AKR1C1

BAA92883

12

Cytoplasm

   myxovirus resistance 1

MX1

P20591

9

Nucleus

   aldolase C

ALDOC

X06984

3

Cytoplasm

   2',5'-oligoadenylate synthetase 1

OAS1

Z18877

3

Cytoplasm

   protein disulfide isomerise, A2

PDIA2

AAC50401

3

Cytoplasm

   RNA (guanine-7-) methyltransferase

RNMT

BAA82447

3

Nucleus

   polymerase, alpha 2

POLA2

AJ245648

-2

Nucleus

   steroid-5-alpha-reductase, alpha 1

SRD5A1

J05035

-2

Cytoplasm

   aminolevulinate, delta-, synthase 2

ALAS2

D86297

-3

Cytoplasm

   glutathione S-transferase A3

GSTA3

X78847

-3

Cytoplasm

   UDP glycosyltransferase 8

UGT8

BC075069

-3

Cytoplasm

   cell division cycle 42

CDC42

U37720

-4

Cytoplasm

   cysteine dioxygenase, type I

CDO1

M35266

-4

Cytoplasm

   ST8 alpha-2,8-sialyltransferase 3

ST8SIA3

X80502

-5

Cytoplasm

G-protein coupled receptors

    

   adrenergic receptor, alpha-2B

ADRA2B

M32061

26

Plasma Membrane

   arginine vasopressin receptor 2

AVPR2

AAB87678

5

Plasma Membrane

   vasoactive intestinal peptide receptor 1

VIPR1

M86835

-2

Plasma Membrane

   cholinergic receptor, muscarinic 3

CHRM3

AB017656

-3

Plasma Membrane

   cholinergic receptor, muscarinic 4

CHRM4

M16409

-10

Plasma Membrane

Growth factors

    

   regenerating islet-derived 3 alpha

REG3A

L10229

1084

Extracellular Space

   regenerating islet-derived 3 beta

REG3B

S43715

672

Extracellular Space

   growth differentiation factor 15

GDF15

AJ011970

80

Extracellular Space

   platelet-derived growth factor alpha

PDGFA

M29464

69

Extracellular Space

   nudix-type motif 6

NUDT6

AF188995

22

Extracellular Space

   jagged 2

JAG2

U70050

5

Extracellular Space

   hepatocyte growth factor

HGF

X84046

4

Extracellular Space

   macrophage stimulating 1

MST1

X95096

-4

Extracellular Space

Ion channels

    

   glutamate receptor, ionotropic, delta 2

GRID2

U08256

91

Plasma Membrane

   purinergic receptor P2X

P2RX2

Y10475

11

Plasma Membrane

Kinases

    

   fyn-related kinase

FRK

U02888

122

Nucleus

   Janus kinase 2

JAK2

U13396

120

Cytoplasm

   phosphatidylinositol 4-kinase beta

PI4KB

D84667

2

Cytoplasm

   pim-3 oncogene

PIM3

AF086624

2

Unknown

   fer tyrosine kinase

FER

X13412

-2

Cytoplasm

   mitogen-activated protein kinase kinase 5

MAP2K5

U37462

-2

Cytoplasm

   fibroblast growth factor receptor 1

FGFR1

S54008

-3

Plasma Membrane

   activin receptor, type IIA

ACVR2A

S48190

-4

Plasma Membrane

Nuclear receptors

    

   retinoic acid receptor alpha

RARA

U15211

20

Nucleus

   nuclear receptor, *C2

NR3C2

M36074

8

Nucleus

   vitamin D receptor

VDR

J03630

-4

Nucleus

Peptidases

    

   complement component 1s

C1S

D88250

230

Extracellular Space

   caspase 1

CASP1

U14647

40

Cytoplasm

   proteasome subunit, alpha 1

PSMA1

M29859

5

Cytoplasm

   kallikrein-related peptidase 8

KLK8

AJ005641

-5

Extracellular Space

Phosphatases

    

   pyruvate dehydrogenase phosphatase 2

PDP2

AF062741

-4

Cytoplasm

   protein tyrosine phosphatase receptor D

PTPRD

U57502

-9

Plasma Membrane

Transcription regulators

    

   signal transducer and activator of transcription 1

STAT1

AF205604

579

Nucleus

   Kruppel-like factor 6

KLF6

AF072403

249

Nucleus

   HIV-1 Tat interacting protein

HTATIP

AAB18236

159

Nucleus

   HIV enhancer binding protein 2

HIVEP2

D37951

65

Nucleus

   upstream transcription factor 1

USF1

U41741

22

Nucleus

   early growth response 1

EGR1

M18416

3

Nucleus

   interferon regulatory factor 1

IRF1

M34253

3

Nucleus

   signal transducer and activator of transcription 2

STAT2

AF206162

3

Nucleus

   breast cancer 1

BRCA1

U36475

-2

Nucleus

   D site of albumin promoter binding protein

DBP

J03179

-2

Nucleus

   nuclear factor I/B

NFIB

Y07685

-2

Nucleus

   transcription elongation factor A 2

TCEA2

D12927

-5

Nucleus

Transmembrane receptors

    

   oxidized low density lipoprotein receptor 1

OLR1

AB018097

587

Plasma Membrane

   histocompatibility 2, Q region locus 10

H2-Q10

M31018

160

Plasma Membrane

   insulin-like growth factor 2 receptor

IGF2R

NM_000876

39

Plasma Membrane

   Fc fragment of IgG receptor IIa (CD32)

FCGR2A

M64368

16

Plasma Membrane

   growth hormone receptor

GHR

Z83757

12

Plasma Membrane

Transporters

    

   cadherin 17

CDH17

X78997

273

Plasma Membrane

   solute carrier family 6, member 3

SLC6A3

M80570

90

Plasma Membrane

   nucleoporin 153kDa

NUP153

L06821

83

Nucleus

   solute carrier family 9, member 2

SLC9A2

L11004

32

Plasma Membrane

   cadherin 17

CDH17

L46874

13

Plasma Membrane

   lipocalin 2

LCN2

X13295

9

Extracellular Space

   syntaxin 4

STX4

L20821

3

Plasma Membrane

   secretory carrier membrane protein 2

SCAMP2

AF295405

2

Cytoplasm

   solute carrier family 12, member 5

SLC12A5

U55816

-3

Plasma Membrane

   solute carrier family 30, member 2

SLC30A2

U50927

-5

Plasma Membrane

   syntaxin 5

STX5

U87971

-8

Cytoplasm

Others

    

   regenerating islet-derived 1 alpha

REG1A

J05722

796

Extracellular Space

   TIMP metallopeptidase inhibitor 1

TIMP1

L31883

210

Extracellular Space

   calcitonin-related polypeptide beta

CALCB

M11596

195

Extracellular Space

   fibrinogen gamma chain

FGG

J00734

164

Extracellular Space

   trans-golgi network protein 2

TGOLN2

X53565

113

Cytoplasm

   LIM and senescent cell antigen-like domains 1

LIMS1

AAA20086

94

Plasma Membrane

   alpha-2-HS-glycoprotein

AHSG

M29758

80

Extracellular Space

   ribosomal protein L3-like

RPL3L

AAC50777

60

Unknown

   collagen, type IV, alpha 5

COL4A5

AB041350

59

Extracellular Space

   parvalbumin

LOC4951

J02705

58

Unknown

   YTH domain containing 1

YTHDC1

AF144731

39

Cytoplasm

   growth hormone releasing hormone

GHRH

Z34092

31

Extracellular Space

   annexin A1

ANXA1

M19967

29

Plasma Membrane

   collagen, type XII, alpha 1

COL12A1

U57362

26

Extracellular Space

   regenerating islet-derived 3 gamma

REG3G

L20869

24

Extracellular Space

   adenylate cyclase activating polypeptide 1

ADCYAP1

S83513

20

Extracellular Space

   heat shock protein 90 kDa, alpha B 1

HSP90AB1

S45392

20

Cytoplasm

   luteinizing hormone beta

LHB

U25653

17

Extracellular Space

   galectin 5

LGALS5

L36862

8

Extracellular Space

   myocilin

MYOC

AF093567

8

Cytoplasm

   prolactin family 8a81

PRL8A8

AB000107

8

Extracellular Space

   troponin C type 2

TNNC2

J05598

8

Unknown

   ribosomal protein L18a

RPL18A

X14181

7

Cytoplasm

   fibrinogen beta chain

FGB

U05675

6

Extracellular Space

   tropomyosin 3

TPM3

X72859

4

Cytoplasm

   tubulin, beta

TUBB

AB011679

4

Cytoplasm

   extracellular proteinase inhibitor

EXPI

X13309

3

Extracellular Space

   growth associated protein 43

GAP43

M16736

3

Plasma Membrane

   galectin 9

LGALS9

U72741

3

Extracellular Space

   tubulin, alpha 4a

TUBA4A

M13444

3

Cytoplasm

   BCL2-like 11

BCL2L11

AF136927

2

Cytoplasm

   integrin alpha 7

ITGA7

X65036

-2

Plasma Membrane

   syndecan 2

SDC2

M81687

-2

Plasma Membrane

   zinc finger protein 260

ZNF260

U56862

-2

Nucleus

   filamin C

FLNC

AF119148

-3

Cytoplasm

   metallothionein 3

MT3

S65838

-3

Cytoplasm

   arginine vasopressin

AVP

M25646

-4

Extracellular Space

   fasciculation and elongation protein zeta 1

FEZ1

U63740

-4

Cytoplasm

   crystallin, alpha B

CRYAB

U04320

-6

Nucleus

   neurofascin

NFASC

U81036

-7

Plasma Membrane

  1. Gene description names, gene symbols are from IPA Tool; accession numbers are from GenBank