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Table 1 Genomic sequences used in the comparative analysis of Vibrionaceae and the calculated number of lineage specific genes in each genome. The inter-genomic search yielded a core genome comprised of 1,882 orthologous proteins

From: Genomic and systems evolution in Vibrionaceae species

Strains Accession ID No. Genes in genome No. Protein coding genes % core in genome No. Families with LSE No. LSE genes % LSEs in genome
      Lineage unique Typical LSE   
V. cholerae N16961 NC_002505 (chr1)
NC_002506 (chr2)
4009 3887 48.86 11 16 59 1.54
V. cholerae O395 NC_009456 (chr 1) NC_009457 (chr 2) 3998 3878 49.05 49 25 153 3.95
V. parahaemolyticus RIMD 2210633 NC_004603 (chr1) NC_004605 (chr2) 4708 4548 42.17 24 30 109 2.40
V. vulnificus CMCP6 NC_004459 (chr1) NC_004460 (chr2) 4796 4796 39.82 16 24 121 2.52
V. vulnificus YJ016 NC_005139 (chr1) NC_005140 (chr2) NC_005128 (plasmid) 4897 4758 40.08 11 26 83 1.74
V. harveyi ATCC BAA-1116 NC_009783 (chr 1) NC_009784 (chr 2) NC_009777 (plasmid) 6238 6040 31.79 97 56 665 11.01
V. splendidus LGP32 NC_011753 (chr 1) NC_011744 (chr 2) 4604 4431 43.35 13 56 165 3.72
A. fischeri MJ11 NC_011184 (chr 1) NC_011186 (chr 2) NC_011185 (plasmid) 4175 4039 47.49 10 17 56 1.39
A. fischeri ES114 NC_006840 (chr1) NC_006841 (chr2) NC_006842 (plasmid) 4038 3882 49.48 3 19 50 1.29
A. salmonicida LFI1238 NC_011312 (chr 1) NC_011313 (chr 2) NC_011314 (plasmid) NC_011315 (plasmid) NC_011316 (plasmid) 4352 3839 49.99 12 47 248 6.48
Photobacterium profundum SS9 NC_006370 (chr 1) NC_006371 (chr 2) NC_005871 (plasmid) 5702 5489 35.20 90 87 551 10.04