Table 3 Repeated element content of different fractions of BAC-end sequences from American Alligator, Painted Turtle and Emu.
| Â | Alligator | Turtle | Emu | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | total | high quality hits | low quality hits | total | high quality hits | low quality hits | total | high quality hits | low quality hits |
Data set size (Mb) | 2.5 | 0.056 | 0.047 | 2.4 | 0.051 | 0.049 | 3.5 | 0.52 | 0.073 |
Percent repeat element content | |||||||||
SINE (MIRs) | 0.72 | 0.42 | 1.44 | 1.78 | 2.76 | 1.96 | 0 | 0 | 0 |
LINEs | 7.64 | 1.34 | 27.87 | 4.61 | 0.71 | 15.15 | 1.25 | 1.30 | 2.16 |
   L2/CR1/Rex | 7.62 | 1.25 | 27.87 | 4.43 | 0.16 | 15.01 | 1.25 | 1.30 | 2.16 |
LTR | 0.22 | 0 | 0 | 0.09 | 0 | 0 | 0.99 | 0.92 | 1.13 |
DNA transposons | 0.1 | 0 | 0.1 | 0.20 | 0 | 12.91 | 0 | 0 | 0 |
microsatellites | 0.33 | 0.08 | 1.5 | 0.35 | 0.31 | 0.12 | 0.38 | 0.07 | 1.42 |
Total interpersed repeats | 8.68 | 1.76 | 29.45 | 6.68 | 3.47 | 17.11 | 2.24 | 2.22 | 3.29 |
Small RNA | 0.22 | 0 | 2.30 | 0.35 | 0 | 12.91 | 0 | 0 | 0 |