Skip to main content

Table 3 Repeated element content of different fractions of BAC-end sequences from American Alligator, Painted Turtle and Emu.

From: Genome evolution in Reptilia: in silico chicken mapping of 12,000 BAC-end sequences from two reptiles and a basal bird

  Alligator Turtle Emu
  total high quality hits low quality hits total high quality hits low quality hits total high quality hits low quality hits
Data set size (Mb) 2.5 0.056 0.047 2.4 0.051 0.049 3.5 0.52 0.073
Percent repeat element content
SINE (MIRs) 0.72 0.42 1.44 1.78 2.76 1.96 0 0 0
LINEs 7.64 1.34 27.87 4.61 0.71 15.15 1.25 1.30 2.16
   L2/CR1/Rex 7.62 1.25 27.87 4.43 0.16 15.01 1.25 1.30 2.16
LTR 0.22 0 0 0.09 0 0 0.99 0.92 1.13
DNA transposons 0.1 0 0.1 0.20 0 12.91 0 0 0
microsatellites 0.33 0.08 1.5 0.35 0.31 0.12 0.38 0.07 1.42
Total interpersed repeats 8.68 1.76 29.45 6.68 3.47 17.11 2.24 2.22 3.29
Small RNA 0.22 0 2.30 0.35 0 12.91 0 0 0