Improving gene expression similarity measurement using pathway-based analytic dimension

BMC Genomics

Table 1 Top 10 scoring profiles for test profile GSM18935 (thalamus) with overall search database.

Scoring method	Similarity score	Profile ID	Cell type	Platform ID	Study ID
CGSEP	0.62	GSM12688	brain	GPL8300	GSE803
	0.61	GSM12708	brain	GPL8300	GSE803
	0.6	GSM12703	spinal	GPL8300	GSE803
	0.59	GSM12753	spinal	GPL8300	GSE803
	0.58	GSM2885	caudate	GPL91	GSE96
	0.58	GSM2820	cerebral	GPL91	GSE96
	0.58	GSM2886	caudate	GPL91	GSE96
	0.58	GSM2881	thalamus	GPL91	GSE96
	0.58	GSM18443	cardiac	GPL570	GSE1145
	0.57	GSM2897	thalamus	GPL91	GSE96
PEPC	0.86	GSM2881	thalamus	GPL91	GSE96
	0.86	GSM2897	thalamus	GPL91	GSE96
	0.84	GSM2885	caudate	GPL91	GSE96
	0.83	GSM2886	caudate	GPL91	GSE96
	0.83	GSM2884	amygdala	GPL91	GSE96
	0.83	GSM2820	cerebral	GPL91	GSE96
	0.83	GSM2828	brain	GPL91	GSE96
	0.82	GSM2874	amygdala	GPL91	GSE96
	0.82	GSM12708	brain	GPL8300	GSE803
	0.82	GSM12688	brain	GPL8300	GSE803

ISSN: 1471-2164