Skip to main content

Table 2 Significant DNA motifs on promoter regions given by WordSpy

From: Characterizing nucleosome dynamics from genomic and epigenetic information using rule induction learning

 

Well-positioned

Delocalized

Order

Motifs

ZScore

Occur#

Seq#

Motifs

ZScore

Occur#

Seq#

1

TG

11.4

10865

995

TG

3.7

1164

69

2

CA

10.4

10913

995

TTG

5.7

406

66

3

GC

4.7

7254

992

TTC

5.3

400

67

4

GA

4.6

10360

993

TGG

4.7

286

61

5

CAA

14.9

3707

949

AGA

4.6

377

67

6

GAA

14.8

3696

948

CAA

4.5

371

69

7

TTC

13.6

3576

954

TTTC

5.3

141

52

8

TGG

12.6

2552

897

GGAA

5.1

101

48

9

CCA

10.5

2493

909

TTCTT

9.9

79

38

10

CTG

8.6

2384

897

TCTTC

7.5

52

34

11

TCT

8.2

3323

926

TTTCT

7.4

65

36

12

TTTG

14.1

1239

720

CTTCT

7.1

50

35

13

TTTC

14

1237

692

TCTTT

6.1

58

35

14

CTTC

13.2

910

553

AGGAA

5.8

42

31

15

CTTT

13.2

1216

668

AAGAA

5.6

53

39

  1. ZScore is computed by using WordSpy.
  2. Occur# is the number of occurrences of the DNA motif in DNA sequences.
  3. Seq# is the number of sequences containing the DNA motif.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us