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Table 5 Selected rules characterizing nucleosome dynamics

From: Characterizing nucleosome dynamics from genomic and epigenetic information using rule induction learning

No.

Rules

Class dist.

1

AA, ATT = enr ∧ H 3K 9Ac = neutral → State = Well

[300 0]

2

ATT = enr ∧ H 3K 4Me 3 = hyper → State = Well

[156 0]

3

AT, GC = enr ∧ CC = low → State = Well

[159 0]

4

AT, CC = enr ∧ GC = low → State = Well

[56 0]

5

AT = low ∧ H 3K 9Ac = neutral ∧ H 4K 12Ac = hyper → State = Well

[10 0]

6

AT, TC = low ∧ ATT = enr → State = Well

[13 0]

7

CT, TG, GA, AT, CTT, GAG, ATT = low ∧ H 3K 18Ac, H 3K 4Me3 = hyper → State = Del

[0 6]

8

GA, TT, GG = low ∧ H 3K 9Ac = hyper ∧ H 3K 4Me3 = hypo → State = Del

[0 3]

9

AA = low ∧ GT, ATT = enr → State = Well

[77 0]

10

ATT = enr ∧ H 3K 9Ac = hyper → State = Well

[66 0]

11

GA, AG, ATT = low ∧ H 2BK 16Ac = neutral ∧ H 4K 12Ac = hypo → State = Del

[0 15]

12

AT = enr ∧ TA, TAA = low ∧ H 3K 9Ac = neutral ∧ H 4K 12Ac = hypo → State = Del

[0 4]

  1. enr, Well and Del are the abbreviations for enriched, Well-positioned and Delocalized, correspondingly.