Table 1 Transposable elements with clear boundaries and signatures of insertion sites identified and collected in SoyTEdb
From: SoyTEdb: a comprehensive database of transposable elements in the soybean genome
Classification | Copy numbers |
|---|---|
Class I: Retrotransposon | 32,552 |
   LTR-Retrotransposon | 32,370 |
Ty1/copia | 13,318 |
Intact element | 4,913 |
Solo LTR | 8,405 |
Ty3/gypsy | 19,052 |
Intact element | 9,193 |
Solo LTR | 9,859 |
   non-LTR Retrotransposon | 182 |
LINE | 182 |
Class II: DNA Transposon | 6,029 |
   Subclass I: | 5,947 |
Tc1/Mariner | 9 |
hAT | 65 |
Mutator | 2,373 |
PIF/Harbinger | 90 |
Pong | 12 |
CACTA | 65 |
MITE | 3,333 |
Tourist | 1,575 |
Stowaway | 1,758 |
   Subclass II: | 82 |
Helitron | 82 |
Total | 38,581 |