Table 1 Markers representing cases when the willow sequence shows best sequence homology to the poplar paralog (paralog 2) or to some other genomic region in poplar other than the expected (paralog 1).
From: High-density linkage mapping and evolution of paralogs and orthologs in Salix and Populus
Marker | Poplar paralog 1* | Poplar paralog 2** | Willow *** | Willow LG |
|---|---|---|---|---|
XI_19_sa | XI:13708412- 13713847 | I:34332298- 34337706 | I:34336820- 34337014 | Ib |
VI_21_sa | VI:1059584- 1063805 | XVI:175981- 180636 | XVI:179650- 180165 | Ib |
XI_14om_sa | XI:13390381- 13396292 | XIII:8162057- 8167721 | XIII:8162846- 8163488 | Ib |
XVII_8om_sa | XVII:2862545- 2865794 | I:21917969- 21921284 | I:21918035- 21918509 | Ib |
V-3 | V | NA | II: II:7149915- 7150175 | II |
XIV_2om_sa_pI+pIII | XIV:1405173- 1410344 | II:11032656- 11037852 | II:11034560- 11035232 | II |
I-3_sa | I:2799329- 2802489 | III:16679089- 16681782 | III:16679770- 16679455 | III |
II_27_sa | II:659865- 663083 | V:17347198- 17350454 | V:17347673- 17348033 | V |
X_23_sa_pI | X:2909535- 2910774 | VIII:13507022- 13508215 | VIII:13507309- 13508014 | VIII |
X_5_sa_pI+pIII | X:4387251- 4392821 | scaff.132:44316- 50181 | scaff.132:46692- 47354 | VIII |
I_55_sa | I:19888722- 19894389 | IX:6182711- 6188752 | IX:6188219- 6188751 | IX |
I_56_sa | I:20786788- 20790053 | IX:5366669- 5370261 | IX:5368352- 5368805 | IX |
R_79_sa | VIII:2675046- 2678768 | X:18365204- 18369371 | X:18368575- 18368938 | X |
I-64_sa | I:28954163- 28960895 | XI:5889680- 5902742 | XI:5899792- 5899792 | XI |
XV_14_sa | XV:4861609- 4865109 | XII:9029417- 9031788 | XII:9030854- 9031468 | XII |
XV_3om_sa | XV:2214022- 2229691 | XII:5650497- 5668349 | XII:5659107- 5659662 | XII |
XIX_16_sa | XIX:10024624- 10029438 | scaff.142:594094- 598587 | scaff.142:595203- 595639 | XIII |
II-22_sa | II:20278259- 20280545 | XIV:7371540- 7374037 | XIV:7372638- 7372921 | XIV |
II-15_sa | II:13716352- 13719221 | XIV:3952304- 3955719 | XIV:3952744- 3952880 | XIV |
R-76_sa | XIII:13007808- 13016472 | XIX:10828344- 10837472 | XIX:10828231- 10828870 | XIX |
Cases when the willow fragment shows best sequence homology to a different region than paralog 1 and 2 in poplar | ||||
I-44_sa | I:8108096- 8110817 | III:11697654- 11701038 | I:28482702- 28483096 | Ib |
VI_20_sa | VI:175694- 177367 | I:24601135- 24605961 | scaff.137:193270- 193790 | Ib |
XVI-4_sa | XVI:3509806- 3516550 | VI:3514697- 3520404 | XVI:3668954- 3669420 | Ib |
VI-22_sa | VI:9566935- 9572156 | scaff.215:114354- 120054 | IV:16209337- 16209466 | B |