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Table 2 Comparison of nine conserved residues involved in peptide binding

From: Comprehensive analysis of MHC class I genes from the U-, S-, and Z-lineages in Atlantic salmon

 

Peptide N terminus

Peptide C terminus

 
 

7

59

159

171

84

123

143

146

147

Diff.

UBA*0301

Y

Y

Y

Y

R

F

T

K

W

 

UBA*1001

A

-

-

-

-

-

-

-

-

1

ULA

-

-

-

-

-

-

-

-

-

0

UGA

-

-

-

-

-

L

S

-

-

2

UDA

H

-

-

Q

-

-

M

-

-

3

UHA1

-

F

-

-

-

-

-

-

-

1

UHA2

-

F

-

-

-

-

-

-

-

1

ZAA

-

-

-

F

-

-

-

-

L

2

ZBA

-

-

-

F

-

-

-

-

-

1

ZCA

-

-

-

F

-

-

-

-

-

1

SAA

R

F

H

L

H

-

Y

-

R

7

LBA

A

E

V

I

H

A

Q

D

G

9

B-F19

-

-

-

-

-

-

-

-

-

0

Trsc-UAA

-

-

-

-

-

L

-

-

-

1

HLA-A2

-

-

-

-

Y

Y

-

-

-

2

  1. Comparison of Atlantic Salmon UBA*0301 [Genbank: AAN75116], UBA*1001 [Genbank: AAN75118], ULA [Genbank: ABQ59666], UGA, UDA, UHA1, UHA2, ZAA, ZBA, ZCA, SAA (described in this paper), LBA [Genbank: DY733800 and GO062643], B-F19 (Chicken) [Genbank: M84766], Trsc-UAA*101 (Shark) [Genbank: AF034316] and HLA-A2 [Genbank: AAA76608].
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BMC Genomics

ISSN: 1471-2164

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