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Table 1 Detected QTLs sorted by trait (ToE - time of emergence: FL - fork length), family, parent and the proportion of phenotypic variation explained (PVE).

From: Discovery and application of insertion-deletion (INDEL) polymorphisms for QTL mapping of early life-history traits in Atlantic salmon

Trait

Family

Mapping parent

LG

QTL position (cM)

PVE

F-value

95% C.I. of QTL position (cM)

Markers in region

      

Obs

5% threshold

1% threshold

  

ToE

1

♀

AS-28

0

0.09

8.87**

3.93

7.52

 

Omm1134

ToE

1

♀

AS-23

0

0.09

8.54*

5.24

8.73

0.0 - 12.0

BHMS7-043, Ssa124, SSf43, 2456V

ToE

1

♀

AS-14

0

0.07

6.37*

4.14

7.54

 

2571c

ToE

1

♀

X5

0

0.06

5.24*

4.96

8.66

0.0 - 25.0

EST46, 1309C

ToE

1

♀

AS-21

0

0.05

4.84*

3.96

6.97

 

EST105

ToE

1

♂

X8

0

0.13

12**

4.31

7.46

0.0 - 18.0

190S, 8396P, EST127

ToE

1

♂

AS-12

0

0.12

11.3**

4.02

7.60

 

Omm1070

ToE

1

♂

AS-32

0

0.08

7.91*

5.03

9.48

0.0 - 9.0

EST44, 1445a, Ssa419UOS

ToE

1

♂

AS-7

34

0.08

7.78*

4.98

7.78

 

BHMS269, SSsp2216

ToE

1

♂

AS-11

0

0.07

6.78*

3.87

7.04

 

Sleel53, EST6, Omm1121, 16424E, Ssa417UOS, EST41

ToE

1

♂

X12

0

0.06

5.3*

3.70

6.47

 

EST70

ToE

2

♀

AS-4

40

0.1

6.79*

5.21

8.12

0.0 - 40.0

HSP, 11005 M, OMM1105

ToE

2

♀

AS-25

1

0.1

6.88*

4.45

7.59

0.0 - 22.0

2136E, Ssa4DIAS, 4493F

ToE

2

♂

AS-5

15

0.1

7*

4.90

7.69

0.0 - 35.0

BHMS7-017, 4151e, EST9, Ind2130, SSsp2201

ToE

2

♂

AS-25

2

0.08

5.77*

4.01

6.31

 

SsaIND2136E, Ssa4DIAS, Ssleer15.1

FL

1

♀

AS-15

9

0.16

14.8**

4.33

8.23

0.0 - 17.0

MHCI, 2273K

FL

1

♀

AS-1

33

0.06

5.5*

4.74

7.58

0.0 - 33.0

Ssa406UOS, 11971N

FL

1

♀

AS-23

0

0.06

5.22*

5.12

8.45

0.0 - 9.0

BHMS7-043, Ssa124, SSf43, 2456V

FL

1

♀

X10

8

0.05

4.86*

4.20

7.13

0.0 - 8.0

EST11, 7157K

FL

1

♀

AS-33

0

0.05

4.58*

4.04

6.90

 

BHMS144

FL

1

♂

X9

0

0.12

11.7**

3.81

6.33

 

EST101, Ind1921, 4868 M, 1271X, EST103

FL

1

♂

X8

18

0.10

9.25**

4.80

8.02

0.0 - 18.0

190S, 8396P, EST127

FL

1

♂

X10

0

0.09

7.98**

3.84

7.27

0.0 - 4.0

EST11, 7157K

FL

1

♂

AS-12

0

0.08

7.87**

3.81

5.90

 

Omm1070

FL

1

♂

AS-1

7

0.08

7.09*

5.53

8.34

0.0 - 25.0

EST115, Ssa406UOS, 2044 M

FL

1

♂

AS-32

0

0.07

6.82*

5.24

8.09

0.0 - 9.0

EST44,1445a, Ssa419UOS

FL

1

♂

AS-9

5

0.05

4.52*

4.26

6.74

0.0 - 5.0

32c, 17300F, BHMS189, EST141, Ind139, Ssosl438

FL

2

♀

AS-13

27

0.09

6.23*

5.36

10.37

0.0 - 29.0

Ssosl25, 9552C, EST74, Ssa289

FL

2

♀

AS-10

7

0.09

6.01*

5.88

8.95

0.0 - 51.0

CTAX, 8570Q, EST58, EST19, Ind457C, 13066I, Ssosl85, EST107

FL

2

♀

AS-14

1

0.09

6.00*

4.28

7.04

 

2571c, BHMS311

FL

2

♂

AS-5

30

0.13

9.89**

5.02

8.68

0.0 - 35.0

BHMS7-017, 4151e, EST9, Ind2130, SSsp2201

FL

2

♂

AS-32

1

0.08

5.58*

4.27

6.15

 

EST44, 4955H

FL

2

♂

AS-12

2

0.07

4.83*

4.15

7.81

 

Omy272UOG, OmyRGT13TUF

  1. Bold F-values indicate values larger than 5% genome-wide significance level threshold. Underlined linkage groups (LG) correspond to the QTL identified more than once in four mapping parents for particular trait. * significant at 5% chromosome-wide level, ** significant at 1% chromosome-wide level.
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