Skip to main content

Table 4 Selected genes considered as meaningful1, which show reduced expression levels (≥ 1.5-fold change) during stationary phase.

From: Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery

Synonym Gene Average mRNA level
MM139/WT
Annotation
b3309 rplX 0.66 50S ribosomal protein L24
b3341 rpsG 0.66 30S ribosomal protein S7
b3936 rpmE 0.66 50S ribosomal subunit protein L31
b2609 rpsP 0.66 30S ribosomal protein S16
b1892 flhD 0.66 transcriptional activator FlhD
b4202 rpsR 0.65 30S ribosomal protein S18
b3310 rplN 0.65 50S ribosomal protein L14
b3606 yibK 0.65 predicted rRNA methylase
b3296 rpsD 0.65 30S ribosomal protein S4
b2185 rplY 0.65 50S ribosomal protein L25
b4200 rpsF 0.64 30S ribosomal protein S6
b0623 cspE 0.64 cold shock protein E
b3342 rpsL 0.64 30S ribosomal protein S12
b1334 fnr 0.63 DNA-binding transcriptional dual regulator of anaerobic growth
b2569 lepA 0.62 GTP-binding protein LepA
b3231 rplM 0.62 50S ribosomal protein L13
b3340 fusA 0.62 elongation factor EF-2
(S7/S12 operon)
b1333 uspE 0.59 stress-induced protein
b3983 rplK 0.58 50S ribosomal protein L11
b3984 rplA 0.57 50S ribosomal protein L1
b3311 rpsQ 0.57 30S ribosomal protein S17
b2606 rplS 0.57 50S ribosomal protein L19
b3934 cytR 0.56 DNA-binding transcriptional dual regulator
b2608 rimM 0.56 16S rRNA-processing protein
b3636 rpmG 0.55 50S ribosomal protein L33
b0162 cdaR 0.54 DNA-binding transcriptional activator
b4201 priB 0.54 primosomal replication protein N (S6 operon)
b3988 rpoC 0.54 DNA-directed RNA polymerase subunit beta' (L10 operon)
b3987 rpoB 0.53 DNA-directed RNA polymerase subunit beta (L10 operon)
b3555 yiaG 0.52 predicted transcriptional regulator
b3703 rpmH 0.45 50S ribosomal protein L34
b1235 rssB 0.11 response regulator of RpoS
  1. 1Meaningful genes were selected by the following criteria: known or predicted function related to the ssrS transcription unit, serving common or related functions, regulatory- and stress-related functions.