Table 2 Characteristics of RPSA (pseudo)genes-general characteristics
From: Characterization of the ovine ribosomal protein SA gene and its pseudogenes
Gene | Acc. No. GenBank | % nucleotide identity RPSA | Start codon/Stop codon | PolyA-signal | Frameshift mutation | Premature stop codon | Longest ORF = RPSA(position) identities/positives |
|---|---|---|---|---|---|---|---|
RPSAP1 | GQ202530 | 93% | ATG/TAA | Yes | No | Yes | 83 aa (1-83) 95%/95% |
RPSAP2 | GQ202531 | 74% | ATG/TAA | Yes | Yes | Yes | 70 aa (34-103) 56%/63% |
RPSAP3 | GQ202532 | 80% | ATG/TAA | No | Yes | Yes | 84 aa (1-84) 82%/87% |
RPSAP4 | GQ202533 | 83% | No/No | No | Yes | N/A | 90 aa (10-99) 48%/53% |
RPSAP5 | GQ202534 | 90% | ATG/TAA | Yes | Yes | Yes | 129 aa (10-138) 91%/92% |
RPSAP6 | GQ202535 | 80% | No/No | No | Yes | N/A | 106 aa (160-265) 65%/70% |
RPSAP7 | GQ202536 | 99% | ATG/TAA | Yes | No | No | 295 aa (1-295) 99%/99% |
RPSAP8 | GQ202537 | 86% | No/TAA | Yes | Yes | N/A | 82 aa (177-258) 80%/80% |
RPSAP9 | GQ202538 | 98% | ATG/No | No | No | No | 171 aa (1-171) 100%/100% |
RPSAP10 | GQ202539 | 94% | No/TAA | Yes | Yes | N/A | 57 aa (174-230) 95%/100% |
RPSAP11 | GQ202540 | 76% | No/No | Yes | Yes | N/A | 107 aa (185-291) 46%/49% |