|  | Gap Penalty | |||
---|---|---|---|---|---|
 |  | 30 | 50 | ||
Match % | Match length | Number of contigs and average length | Number of assembled reads | Number of contigs and average length | Number of assembled reads |
85% | 19 | 50,689 (537) | 255,711 | 51,058 (533) | 252,299 |
 | 23 | 49,621 (516) | 248,537 | 50,039 (513) | 245,563 |
 | 25 | 48,962 (507) | 244,120 | 49,366 (504) | 241,289 |
90% | 19 | 55,886 (499) | 220,517 | 55,996 (497) | 217,169 |
 | 23 | 53,724 (490) | 213,344 | 53,824 (488) | 209,916 |
 | 25 | 52,770 (485) | 209,735 | 52,726 (483) | 206,167 |
95% | 19 | 51,289 (443) | 156,578 | 51,908 (441) | 154,605 |
 | 23 | 46,611 (441) | 142,428 | 46,585 (439) | 140,071 |
 | 25 | 44,752 (439) | 137,096 | 44,674 (437) | 134,566 |
Combination of reference-based (match % = 88) and de novo assemblies (match % = 93) | |||||
88%,93% | 19 | 63,687 (500) | 225,517 | Â | Â |