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Table 2 454 EST matches to annotated protein databases.

From: Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

 

Contigs (63,687)

Singletons (239,793)

Combined Set (303,480)

UniRef50

      

   Matches to database

20,301

(32%)

30,836

(13%)

51,137

(17%)

   Unique matches to proteins

8,316

(13%)

10,732

(4%)

15,683

(5%)

TAIR9

      

   Matches to database

11,663

(18%)

12,799

(5%)

24,462

(8%)

   Unique matches to proteins

5,635

(9%)

5,025

(2%)

8,385

(3%)

  1. Numbers and percentages of 454 ESTs in the assembled contigs, singletons, and the combined sequence set with matches to known proteins in BLASTx searches of two annotated protein databases (Uniref50, [36]; TAIR9 [37]).
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BMC Genomics

ISSN: 1471-2164

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