Skip to main content

Advertisement

Table 2 454 EST matches to annotated protein databases.

From: Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

  Contigs (63,687) Singletons (239,793) Combined Set (303,480)
UniRef50       
   Matches to database 20,301 (32%) 30,836 (13%) 51,137 (17%)
   Unique matches to proteins 8,316 (13%) 10,732 (4%) 15,683 (5%)
TAIR9       
   Matches to database 11,663 (18%) 12,799 (5%) 24,462 (8%)
   Unique matches to proteins 5,635 (9%) 5,025 (2%) 8,385 (3%)
  1. Numbers and percentages of 454 ESTs in the assembled contigs, singletons, and the combined sequence set with matches to known proteins in BLASTx searches of two annotated protein databases (Uniref50, [36]; TAIR9 [37]).