Skip to main content

Advertisement

Table 3 Summary and taxonomic source of BLAST matches to 454 ESTs.

From: Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

Taxonomic category Contigs Singletons Combined Set
Conifer 1,170 (14.1%) 966 (9.0%) 1,536 (9.8%)
Other plant 4,984 (59.9%) 5,191 (48.4%) 8,309 (53.0%)
Insect 363 (4.4%) 1,176 (11.0%) 1,413 (9.0%)
Fungi 388 (4.7%) 1,392 (13.0%) 1,625 (10.4%)
Protozoa 104 (11.3%) 172 (1.6%) 240 (1.5%)
Other Eukaryote 1,208 (14.5%) 1,614 (15.0%) 2,260 (14.4%)
Bacteria 82 (1.0%) 199 (1.9%) 270 (1.7%)
Virus 16 (0.2%) 22 (0.2%) 30 (0.2%)
  1. Number and percentages of unique best BLASTx matches of 454 EST contigs, singletons, and the combined sequence set to Uniref50 grouped by taxonomic category.