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Table 1 Gene Set Enrichment Analysis (GSEA) of liver transcriptome of HgCl2-treated zebrafish.

From: Mercury-induced hepatotoxicity in zebrafish: in vivo mechanistic insights from transcriptome analysis, phenotype anchoring and targeted gene expression validation

 

Up-regulated

NES

Down-regulated

NES

8 h

  

Electron transport chain

-2.1201 (15)

   

Mitochondrial fatty acid beta-oxidation

-1.4134 (10)

   

Nuclear receptor signaling pathway

-1.484 (7)

   

Extrinsic apoptotic pathway

-1.5717 (4)

24 h

Proteasome pathway

1.7531 (7)

Mitochondrial fatty acid beta-oxidation

-1.7489 (10)

 

Complement activation (classical)

1.6751 (2)

  

48 h

Proteasome pathway

2.0369 (8)

Mitochondrial fatty acid beta-oxidation

-1.5011 (6)

 

Electron transport chain

1.6143 (15)

Nuclear receptor signaling pathway

-1.689 (8)

96 h

Proteasome pathway

1.9855 (5)

Non-substrate GSK3 interacting proteins

-1.533 (5)

 

Complement activation (classical)

1.435 (2)

Cell cycle

-1.3784 (12)

 

DNA damage signaling pathway

1.4009 (14)

Wnt signaling pathway

-1.337 (8)

 

Actin pathway

1.7501 (3)

  
 

Fatty acid synthesis

1.5715 (4)

  
 

Intrinsic apoptotic pathway

1.401 (4)

  
 

Hypoxia-induced factor pathway

1.3243 (5)

  
 

Cell motility

1.2936 (5)

  
 

Gluconeogenesis

1.0784 (7)

  
 

Electron transport chain

1.6832 (18)

  
  1. Biological pathways that are statistically enriched with false discovery rate (FDR) < 0.3 or nominal p-value (NP) < 0.1 are shown. Values of normalized enrichment score (NES) indicate the activities of enriched pathways with positive and negative NES shows up- and down-regulation, respectively. Number of leading edge genes for each pathway is given in bracket besides the NES values.