Skip to main content

Table 2 Comparison of T4 and CP220 Structural Proteins

From: Evidence for a lineage of virulent bacteriophages that target Campylobacter

CP220 CDS

T4 Lengtha

CP220 Lengtha

T4 Gene Functionb

CP220/T4 Identity (%)

E valuec

CPT_0001

610

744

Gp17 Terminase subunit with nuclease and ATPase activity; binds single-stranded DNA, Gp16 and Gp20

143/436 (32%)

E = 4e-47

CPT_0005

516

503

Gp39 DNA topoisomerase large subunit

186/516 (35%)

E = 4e-73

CPT_0009

342

347

Gp61 DNA primase subunit

73/330 (22%)

0.017

CPT_0010

319

304

Gp44 Clamp loader subunit, DNA polymerase accessory protein

95/319 (29%)

E = 8e-27

CPT_0011

305

352

RNaseH ribonuclease

56/151 (37%)

E = 6e-16

CPT_0029

157

178

Gp49 EndoVII packaging and recombination endonuclease VII

28/108 (25%)

E = 0.11

CPT_0030

524

569

Gp20 Portal vertex protein of head

130/456 (28%)

E = 5e-40

CPT_0033

487

429

Gp30 DNA ligase

128/484 (26%)

E = 2e-23

CPT_0034

659

516

Gp18 Tail sheath monomer

58/235 (24%)

E = 3e-04

CPT_0037

134

120

Gp25 Baseplate wedge subunit

26/66 (39%)

E = 2e-07

CPT_0041

660

1214

Gp6 Baseplate wedge subunit

86/389 (22%)

E = 0.025

CPT_0045

163

252

Gp19 Tail tube protein

49/176 (27%)

E = 9e-11

CPT_0046

150

158

Gp4 Head completion protein

44/147 (29%)

E = 5e-08

CPT_0048

185

255

Gp55 Sigma factor for T4 late transcription

33/123 (26%)

E = 0.37

CPT_0051

521

444

Gp23 Major head protein

131/412 (31%)

E = 2e-41

CPT_0053

659

578

Gp18 Tail sheath protein

149/436 (34%)

E = 1e-51

CPT_0058

163

196

Gp19 Tail tube protein

41/170 (24%)

E = 5e-09

CPT_0115

898

882

Gp43 DNA polymerase

244/901 (27%)

E = 4e-56

CPT_0125

475

445

Gp41 DNA primase-helicase subunit

120/453 (26%)

E = 1e-34

CPT_0148

587

472

UvsW RNA-DNA and DNA-DNA helicase, ATPase

124/407 (30%)

E = 5e-42

CPT_0174

272

456

Gp15 Tail sheath stabilizer and completion protein

54/214 (25%)

E = 1e-05

CPT_0177

301

306

Gp32 Single-stranded DNA binding protein

65/212 (30%)

E = 6e-12

CPT_0181

374

361

RnlA RNA ligase 1 and tail fiber attachment catalyst

80/297 (26%)

E = 3e-10

CPT_0193

212

236

Gp21 Prohead core protein protease

52/153 (33%)

E = 2e-08

  1. a Length refers to the number of amino-acid residues in the CDS and are calculated from the genomic sequence
  2. b T4 gene product and functions are according to Miller [26]
  3. c Identity and E values are from NCBI BLAST results, performed on 5th January 2009