Skip to main content

Table 1 List of fungal species, genomes of which were analyzed in silico in present study

From: Evolutionary genomics revealed interkingdom distribution of Tcn1-like chromodomain-containing Gypsy LTR retrotransposons among fungi and plants

Phylum/Subphylum Class Species and strain genome size
(Mb)
LTRa
Ascomycota/Pezizomycotina Sordariomycetes Chaetomium globosum CBS 148.51 36 23
   Fusarium oxysporum 4286 FGSC 60 39
   Fusarium verticillioides 7600 46 4
   Nectria haematococca MPVI 40 65
   Podospora anserina S mat+ 37 11
   Trichoderma reesei QM6a 33 5
   Trichoderma virens Gv29-8 38 5
  Eurotiomycetes Aspergillus clavatus NRRL 1 35 29
   Aspergillus niger ATCC1015 37 1
   Aspergillus terreus NIH2624 35 3
   Coccidioides immitis RS 29 236
   Histoplasma capsulatum NAm1 28 74
   Uncinocarpus reesii 1704 30 64
  Leotiomycetes Sclerotinia sclerotiorum 1980 38 25
   Botrytis cinerea B05.10 38 25
  Dothideomycetes Alternaria brassicicola ATCC 96866 30 108
   Pyrenophora tritici-repentis Pt-1C-BFP 37.8 118
   Stagonospora nodorum SN15 37 12
Basidiomycota/Agaricomycotina Agaricomycetes (Homobasidiomycetes) Amanita bisporigera 58 7
   Coprinus cinereus Okayama7#130 38 160
   Laccaria bicolor S238N 61 114
   Postia placenta MAD-698 90 921
Basidiomycota/Pucciniomycotina Urediniomycetes Sporobolomyces roseus 21 6
   Puccinia graminis f. sp. tritici 81.5 534
Chytridiomycota Chytridiomycetes Batrachochytrium dendrobatidis JEL423 24 1
  1. a total copy number of detected Gypsy LTR retrotransposons