From: A toolkit for rapid gene mapping in the nematode Caenorhabditis briggsae
Chr | Indel ID | Location | Ultra_contig | AF16 Amplicon (bp) | HK104 Amplicon (bp) | Predicted indel | Validation status | Validation Type | ||
---|---|---|---|---|---|---|---|---|---|---|
 |  | (cM) |  | Predicted | Observed | Predicted | Observed |  |  |  |
1 | cb-m142 | 12.6 | cb25.fpc4321 | 665 | 700 | 915 | 950 | 250 bp insertion | 250 bp insertion | * |
 | cb-m2 | 13.5 | cb25.fpc4321 | 1461 | Failed PCR | 1125 | Failed PCR | 336 bp deletion | Failed PCR |  |
 | cb-m5 | 20.0 | cb25.fpc4171 | 774 | 750 | 674 | Failed PCR | 100 bp deletion | Failed PCR |  |
 | cb-m5 | 20.0 | cb25.fpc4171 | 461 | 500 | 361 | 500 | 100 bp deletion | no indel |  |
 | cb-m6 | 43.9 | cb25.fpc4140 | 930 | 900 | 785 | 1000 | 145 bp deletion | 100 bp insertion | ** |
 | cb-m13 | unknown | cb25.fpc0078 | 504 | 420 | 385 | 400 | 119 bp deletion | 20 bp deletion | ** |
 | cb-m14 | unknown | cb25.fpc4127 | 1000 | 1000 | 676 | 710 | 324 bp deletion | 290 bp deletion | * |
 | cb-m146 | unknown | cb25.fpc4122 | 406 | 480 | 506 | 530 | 100 bp insertion | 50 bp insertion | ** |
 | cb-m12 | unknown | cb25.fpc4127 | 921 | Failed PCR | 416 | 1000 | 505 bp deletion | Failed PCR |  |
2 | cb-m21 | 24.2 | cb25.fpc0058 | 825 | 900 | 670 | 700 | 155 bp deletion | 200 bp deletion | * |
 | cb-m16 | 37.4 | cb25.fpc4071 | 1097 | >1500 | 687 | >1500 | 410 bp deletion | unclear |  |
 | cb-m19 | 11.9-13.1 | cb25.fpc0011 | 1364 | 1013 | 828 | 750 | 536 bp deletion | 263 bp deletion | ** |
 | cb-m149 | 27.9-34.0 | cb25.fpc4206 | 470 | 490 | 603 | 600 | 133 bp insertion | 110 bp insertion | * |
 | cb-m26 | 27.9-34.0 | cb25.fpc4206 | 678 | 700 | 407 | 410 | 271 bp deletion | 290 bp deletion | * |
 | cb-m38 | unknown | cb25.fpc4131 | 835 | 860 | 544 | 600 | 291 bp deletion | 260 bp deletion | * |
 | bdP4 | unknown | cb25.fpc2441 | 1013 | ~990 | 903 | ~880 | 110 bp deletion | 110 bp deletion | * |
3 | cb-m46 | 6.1 | cb25.fpc2587 | 747 | 1020 | 574 | 750 | 173 bp deletion | 270 bp deletion | * |
 | cb-m155 | 6.1 | cb25.fpc2587 | 1169 | Failed PCR | 1329 | Failed PCR | 160 bp insertion | Failed PCR |  |
 | cb-m48 | 21.2 | cb25.fpc2976 | 1163 | 1200 | 644 | 1200 | 519 bp deletion | no indel |  |
 | cb-m205 | 25.8 | cb25.fpc4079 | 671 | 700 | 971 | 1000 | 300 bp insertion | 300 bp insertion | * |
 | cb-m159 | 36.5 | cb25.fpc4224 | 463 | 500 | 655 | Failed PCR | 192 bp insertion | Failed PCR |  |
 | cb-m160 | 28.8-29.3 | cb25.fpc2193 | 821 | 1000 | 1053 | 1200 | 232 bp insertion | 200 bp insertion | * |
 | bdP1 | 31.3 | cb25.fpc0002 | 1723 | ~1700 | ~1500 | ~1500 | ~200 bp deletion | 200 bp deletion | * |
4 | cb-m172 | 18.2 | cb25.fpc0039 | 650 | 700 | 904 | 950 | 254 bp insertion | 250 bp insertion | * |
 | cb-m170 | 20.6 | cb25.fpc4090 | 691 | 720 | 931 | Failed PCR | 240 bp insertion | Failed PCR |  |
 | cb-m171 | 25.5 | cb25.fpc4132 | 381 | 450 | 476 | 550 | 95 bp insertion | 100 bp insertion | * |
 | cb-m70 | 25.5 | cb25.fpc4132 | 594 | >1600 | 421 | 1600 | 173 bp deletion | very large indel | ** |
 | cb-m176 | 37.5-41.2 | cb25.fpc3835 | 732 | Failed PCR | 1014 | Failed PCR | 282 bp insertion | Failed PCR |  |
 | cb-m74 | 37.5-41.2 | cb25.fpc3835 | 677 | 1000 | 523 | 700 | 154 bp deletion | 300 bp deletion | ** |
 | cb-m76 | 42.4-43.0 | cb25.fpc2328 | 709 | 900 | 527 | 550 | 182 bp deletion | 350 bp deletion | ** |
 | cb-m177 | 9.2-9.8 | cb25.fpc4118 | 801 | 800 | 946 | 900 | 145 bp insertion | 100 bp insertion | * |
 | cb-m179 | unknown | cb25.fpc4331 | 383 | 450 | 500 | 520 | 117 bp insertion | 70 bp insertion | * |
5 | cb-m103 | 19.0 | cb25.fpc2220 | 600 | 700 | 454 | 500 | 146 bp deletion | 200 bp deletion | * |
 | cb-m97 | 46.1 | cb25.fpc4109 | 591 | 705 | 392 | 490 | 199 bp deletion | 215 bp deletion | * |
 | cb-m105 | 37.0-37.7 | cb25.fpc4063 | 692 | 800 | 454 | 520 | 238 bp deletion | 280 bp deletion | * |
 | cb-m104 | 37.0-37.7 | cb25.fpc4063 | 942 | Failed PCR | 661 | Failed PCR | 281 bp deletion | Failed PCR |  |
x | cb-m197 | 3.5 | cb25.fpc4033 | 692 | 700 | 855 | 790 | 163 bp insertion | 90 bp insertion | * |
 | cb-m204 | 17.4 | cb25.fpc4044 | 689 | 750 | 949 | 1000 | 260 bp insertion | 250 bp insertion | * |
 | cb-m136 | 30.1 | cb25.fpc0829 | 1440 | 2000 | 645 | 750 | 795 bp deletion | 1250 bp deletion | * |
 | cb-m127 | 34.1 | cb25.fpc2334 | 486 | 600 | 349 | 405 | 137 bp deletion | 195 bp deletion | * |
 | cb-m126 | 34.1 | cb25.fpc2334 | 785 | Failed PCR | 648 | Failed PCR | 137 bp deletion | Failed PCR |  |
 | cb-m135 | 27.4-34.1 | cb25.fpc0829 | 720 | 900 | 584 | Failed PCR | 136 bp deletion | Failed PCR |  |