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Table 2 Assembly and Map statistics for the Yersinia genomes.

From: Finishing genomes with limited resources: lessons from an ensemble of microbial genomes

 

454 Contigs

Optical Map

Strain

Coverage

Count (>10 Kbp)

N50 Size (Kbp)

Size (Mbp)

Fragments

N50 Size (Kbp)

Y. kristensenii

29×

488 (50)

93

AflII: 4.63

350

5.5

Y. aldovae

25×

375 (83)

86

AflII: 4.30

360

11.4

Y. mollaretii

36×

1637 (74)

85

AflII: 4.93

397

19.0

    

NheI: 4.92

556

6.4

Y. fredriksenii

29×

1244 (46)

150

AflII: 5.34

467

24.7

    

NheI: 5.39

611

3.6

Y. bercovieri

26×

1219 (84)

59

AflII: 4.54

415

2.6

    

NheI: 4.50

591

13.9

Y. intermedia

35×

1242 (60)

124

AflII: 4.95

436

6.6

    

NheI: 5.06

537

10.2

Y. rohdei

22×

281 (59)

116

AflII: 4.65

413

11.3

    

NheI: 4.64

458

12.7

Y. ruckerii

36×

419 (63)

79

AflII: 3.90

142

29.6

    

NheI: 3.95

457

7.9

  1. For the 454 contigs we report the average coverage of the contigs, the number of contigs (with large contigs in parentheses) and the N50 size. For the optical maps, we report the total size, number of fragments and N50 size of fragments for AflII and NheI based maps on seperate lines.
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BMC Genomics

ISSN: 1471-2164

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