A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

BMC Genomics

Table 2 5'- and 3'-end properties of the sRNA candidates

ends		trans-encoded sRNA (151)				cis-encoded antisense sRNA (96)				mRNA leader (378)				sense sRNA (447)
5'	3'	S1	S2	S1&2	total	S1	S2	S1&2	total	S1	S2	S1&2	total	S1	S2	S1&2	total
0	0	0	5	0	5	0	3	0	3	1	10	0	11	0	62	0	62
	1	0	3	0	3	0	2	0	2	0	3	0	3	0	16	0	16
	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2
	m	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
1	0	13	9	6	28	7	16	3	26	18	69	25	112	18	103	12	133
	1	5	6	9	20	2	12	2	16	8	12	23	43	5	83	10	98
	2	1	2	3	6	0	4	3	7	3	5	8	16	1	14	3	18
	m	0	0	12	12	0	1	5	6	1	2	13	16	0	4	1	5
2	0	2	2	6	10	0	3	3	6	10	17	11	38	2	16	1	19
	1	3	5	2	10	0	4	2	6	2	13	21	36	0	20	5	25
	2	0	1	3	4	0	1	2	3	1	4	6	11	1	7	4	12
	m	1	1	12	14	0	1	3	4	0	1	16	17	0	6	4	10
m	0	1	0	2	3	0	0	1	1	1	2	7	10	0	0	1	1
	1	2	1	2	5	0	1	1	2	1	8	13	22	0	7	5	12
	2	0	3	6	9	0	1	2	3	0	5	13	18	0	10	2	12
	m	0	0	22	22	0	3	8	11	0	0	25	25	0	14	8	22

Ends: 5' and 3'; number of defined 5'/3'-ends per transcript; S1, S2, S1&2: number of transcripts in sample 1, 2 and both samples, which match the defined 5'/3'-end criteria; total: number of transcripts in all samples which match the defined 5'/3'-end criteria.

ISSN: 1471-2164