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Table 3 Blast search results

From: A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

E-value 7e-15 und target length >= 0.7 * query length
tax_group known cis-encoded antisense sRNA cis-encoded mRNA leader ORF sense sRNA trans-encoded sRNA
Sinorhizobium meliloti n 103 385 8 462 203
Sinorhizobium meliloti n 2 38 1 75 13
Sinorhizobium meliloti y 7 39 0 134 15
Sinorhizobium n 52 306 7 332 94
Sinorhizobium y 2 7 0 295 0
Sinorhizobium/EnsiferGroup n 0 0 0 0 0
Sinorhizobium/EnsiferGroup y 0 0 0 72 0
Rhizobiaceae n 105 604 15 1099 191
Rhizobiaceae y 1 42 1 915 18
Rhizobiales n 104 290 4 1538 242
Rhizobiales y 6 145 0 1433 3
Alphaproteobacteria n 10 47 2 696 9
Alphaproteobacteria y 1 0 0 39 0
   0.059 0.15 0.03 0.44 0.061
Gammaproteobacteria n 0 30 0 726 0
Gammaproteobacteria y 0 0 0 225 0
Betaproteobacteria n 6 27 3 881 0
Betaproteobacteria y 0 0 0 556 0
delta/epsilonSubdivisions n 0 3 0 228 0
delta/epsilonSubdivisions y 0 0 0 212 0
unclassified Proteobacteria n 0 0 0 2 0
unclassified Proteobacteria y 0 0 0 1 0
Bacteria n 0 6 0 610 0
Bacteria y 0 0 0 442 0
other n 1 6 0 105 3
other y 1 32 0 592 3
  1. Results of the BLAST search with sRNA trancripts against sequence databases with an E-value cut-off 7e-15 and the requirement that the hit covers at least 70% of the query are shown. Hits are classified as known (marked y in the "known"column) if annotation information is associated with the database sequence. Hit counts are given in taxonomic order. Hits to the taxonomic group do not include the hits to the subgroup which is listed above it. For the alpha-proteobacteria (including all subgroups), the percentage of "known" versus "unknown" hits for each class of transcript is listed. y, known; n, unknown.