Method
|
454
|
CS
|
454
|
CS
|
454
|
CS
|
454
|
454
|
454
|
454
|
454
|
CS
|
---|
Amplicon
|
F2
|
S1
|
F5
|
S2
|
F5
|
S2
|
F4
|
F6
|
F7
|
F8
|
Total
|
---|
MSV HCs
|
1-2
|
#
|
#
|
6-8
|
#
|
#
|
7-10a*
|
#
|
#
|
3-5
|
#
|
11-15
|
#
|
16-18
|
#
|
19-24
|
#
|
HCs
|
#
|
---|
C0140
|
GA
|
1.566
|
112
|
TCC
|
664
|
136
|
CCGgGc
|
1.491
|
81
|
TAT
|
582
|
CCTCG
|
867
|
TCG
|
888
|
CTACCG
|
542
| | |
|
GG
|
583
|
36
| | | |
CCGaGc
|
431
|
55
|
CAT
|
390
|
CCTAG
|
816
|
TTA
|
288
|
TCTTTA
|
195
| | |
|
CA
|
528
|
30
| | | | | | |
TAC
|
382
| | | | | | |
10.213
|
450
|
C0766
|
GG
|
1.525
|
114
|
TCC
|
360
|
140
|
CCGgGc
|
1.084
|
147
|
TAC
|
1.679
| |
nd
|
TCG
|
1.878
|
CTACCG
|
876
| | |
|
CA
|
842
|
41
|
CCC
|
195
|
48
|
CCGgAc
|
506
|
41
|
CAT
|
601
| | | | | | |
9.546
|
531
|
C0913
|
CA
|
1.869
|
113
|
TCC
|
680
|
132
|
CCGgGc
|
1.221
|
145
|
TAC
|
1.556
|
CCTCG
|
1.195
|
TCG
|
1.816
|
CTACCG
|
2.153
| | |
|
GA
|
1.157
|
58
|
CCC
|
287
|
54
|
CCGgAc
|
617
|
41
|
TCC
|
634
|
CCTAG
|
593
| | | | |
13.778
|
543
|
NA12760
|
GA
|
1.750
|
92
|
TCC
|
795
|
99
|
CCGgGc
|
1.566
|
104
|
TAC
|
2.825
|
CCTCG
|
1.669
|
TTA
|
2.056
|
TCTTTA
|
645
| | |
|
GG
|
386
|
20
|
CCC
|
181
|
60
|
CCGgAc
|
339
|
55
|
TAT
|
981
|
CTCAC
|
599
|
TCG
|
1.696
|
CTACCG
|
605
| | |
|
CA
|
319
|
19
|
CTG
|
184
|
0
|
TGGgAc
|
459
|
0
|
TCC
|
797
|
CCTAG
|
499
| | | | |
18.351
|
449
|
NA15029
|
GA
|
1.530
| |
TCC
|
767
|
nd
|
CCGgGc
|
1.046
|
nd
|
TCC
|
1.156
|
CCTGC
|
1.785
|
TTA
|
1.689
|
TCTTTA
|
377
| | |
|
GG
|
805
| | | | |
CCAgGc
|
431
| |
TAT
|
882
|
CTCAT
|
1.087
|
TCG
|
1.115
|
CTACCG
|
267
| | |
| | | |
CTG
|
475
| |
TGGgAc
|
913
| |
TAC
|
496
| | | | | | | | |
| | | | | | | | | |
CAT
|
420
| | | | | | |
15.241
| |
NA15213
|
GA
|
1.326
| |
TCC
|
665
|
nd
|
CCGgGc
|
1.338
|
nd
|
TAC
|
278
|
CCTCG
|
1.178
|
TCG
|
1.496
|
CTACCG
|
929
| | |
|
CA
|
349
| |
CTG
|
171
| |
TGGgAc
|
390
| |
TAT
|
98
|
CCTAG
|
577
|
TTA
|
866
|
TCTTTA
|
551
| | |
| | | | | | | | | |
TCC
|
87
|
CTCAT
|
473
| | | | |
10.772
| |
NA15385
|
GA
|
985
| |
TCC
|
374
|
nd
|
CCGgGc
|
702
|
nd
|
TAC
|
1.374
|
CCTCG
|
1.003
|
TCG
|
938
|
CTACCG
|
688
| | |
|
GG
|
592
| |
CCC
|
169
| |
CCGgAc
|
239
| |
TAT
|
673
|
CCTAG
|
322
|
TTA
|
782
|
TCTTTA
|
483
| | |
| | | |
CTG
|
88
| |
TGGgAc
|
188
| |
TCC
|
345
|
CTCAT
|
280
| | | | |
10.225
| |
NA18502
|
GA
|
812
|
80
|
TCC
|
182
|
125
|
CCGgGc
|
265
|
139
|
TAT
|
1.453
|
CCTCG
|
415
|
TTA
|
856
|
TCTTTA
|
645
| | |
|
CA
|
561
|
58
|
CCC
|
21
|
15
|
CCGgGa
|
56
|
0
| | |
TTCAT
|
65
|
TCG
|
418
|
CTACCG
|
267
| | |
| | | |
CCG
|
(7)
|
0
|
CGGgAc
|
39
|
0
| | | | | | | | |
5.995
|
402
|
NA18552
|
CA
|
3.490
| |
TCC
|
197
|
nd
|
CCGgGc
|
273
|
nd
|
TAT
|
225
|
CCTCG
|
1.653
|
TCG
|
1.756
|
CTACCG
|
1.525
| | |
| | | |
CCC
|
328
| |
CCGgAc
|
340
| |
TAC
|
1.058
| | | | | | | | |
| | | | | | | | | |
CAT
|
503
| | | | | | |
11.348
| |
NA18858
|
GA
|
677
|
97
|
TCC
|
1.234
|
188
|
CCGgGc
|
623
|
124
|
TAT
|
1.490
|
CCTCG
|
1.327
|
TTA
|
1.087
|
TCTTTA
|
2.404
| | |
|
CA
|
324
|
45
| | | |
CCGaGc
|
218
|
51
|
TAC
|
822
| | |
TCG
|
404
|
CTACCG
|
633
| | |
|
GG
|
205
|
(16)
| | | | | | | | | | | | | | |
11.448
|
505
|
NA19140
|
GA
|
314
|
57
|
TCC
|
706
|
nd
|
CCGgGc
|
234
|
nd
| |
nd
|
CCTCG
|
504
|
TTA
|
281
| |
nd
| | |
|
CA
|
310
|
73
| | | |
CCGaGc
|
42
| | | |
CTCAT
|
130
|
TCG
|
62
| | | | |
|
GG
|
105
|
24
| | | | | | | | | | | | | | |
2.688
|
154
|
Total
| |
22.910
|
1.069
| |
8.702
|
982
| |
15.012
|
983
| |
21.787
| |
17.037
| |
20.372
| |
13.785
|
119.605
|
3.034
|
- #: number of HCs; *: alleles in lower cases refer to the 2 additionally identified MSVs 9a and 10a; (): nominally below 10% threshold; nd: no data.