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Table 2 Main characteristics of STRs in the genome of Daphnia pulex and 11 other taxa.

From: Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach

  Mono Di Tri Tetra Penta Hexa total
D. pulex        
total counts 17161 16104 21458 4630 3476 2382 65211
density [bp/Mbp] 1747.1 1884.8 2662.0 632.9 534.8 418.0 7866.0
density [%] 22.2 23.9 33.8 8.0 6.8 5.3 100.0
mean length 16.2 18.6 19.7 21.7 24.5 27.8 19.2
standard deviation 4.1 5.5 6.4 11.2 20.2 22.9  
D. melanogaster        
total counts 15701 14511 9622 4770 5984 8220 58808
density [bp/Mbp] 1639.0 1961.6 1543.7 939.2 3253.7 1538.1 10876.0
density [%] 15.1 18.0 14.2 8.6 29.9 14.1 100.0
Mean length 17.0 22.0 26.1 32.1 89.3 30.6 30.2
standard deviation 10.1 13.3 31.0 65.3 189.5 52.8  
A. mellifera        
total counts 54104 69036 28005 16755 11528 8673 188101.0
density [bp/Mbp] 4166.4 7860.8 3181.9 1742.1 1313.4 1008.6 19184.1
density [%] 21.6 40.8 16.5 9.0 6.8 5.2 100.0
mean length 17.8 26.3 26.3 24.1 26.5 27.0 23.7
standard deviation 6.0 17.1 24.1 18.0 29.6 55.0  
C. elegans        
total counts 4104 3004 2570 927 582 2430 13617
density [bp/Mbp] 653.4 727.3 480.6 224.9 120.2 1373.0 3577.7
density [%] 18.3 20.3 13.4 6.3 3.4 38.4 100.0
mean length 16.0 24.3 18.8 24.3 20.7 56.8 26.4
standard deviation 3.8 23.5 5.4 32.1 6.9 72.3  
H. sapiens        
total counts 591617 224459 77621 200797 105107 55324 1254925
density [bp/Mbp] 3889.6 2267.4 658.7 2249.0 1032.1 511.5 10547.3
density [%] 36.7 21.4 6.2 21.2 9.7 4.8 100.0
Mean length 18.8 28.9 24.3 32.2 28.3 26.5 24.2
standard deviation 5.7 20.7 28.9 53.4 84.7 24.7  
M. musculus        
total counts 286206 563483 127365 351575 140683 93653 1562965
density [bp/Mbp] 2107.5 8913.8 1877.2 5360.1 1994.9 1517.1 21601.6
density [%] 9.7 40.9 8.6 24.6 9.2 7.0 100.0
Mean length 18.8 40.4 37.7 39.2 36.6 41.6 35.7
standard deviation 7.4 31.7 45.3 40.4 36.4 49.3  
G. gallus        
total counts 142803 27674 21667 39190 24240 9382 264956
density [bp/Mbp] 2617.8 625.8 450.1 1138.0 964.8 330.2 6094.5
density [%] 42.7 10.2 7.3 18.6 15.7 5.4 100.0
Mean length 18.1 22.3 20.5 28.8 39.5 35.0 22.8
standard deviation 6.0 11.2 7.8 34.1 46.3 41.6  
A. thaliana        
total counts 10492 6471 6017 982 1540 1840 27342
density [bp/Mbp] 1468.7 1264.9 1052.8 158.9 253.7 350.0 4544.2
density [%] 32.3 27.8 23.1 3.5 5.6 7.7 100.0
Mean length 16.7 23.3 20.8 19.3 19.6 22.7 19.8
standard deviation 4.2 13.9 14.1 9.1 3.7 7.8  
T. pseudonana        
total counts 29 344 2222 237 101 202 3135
density [bp/Mbp] 13.0 235.8 1457.0 188.0 66.4 385.3 2344.3
density [%] 0.6 10.1 62.1 8.0 2.8 16.4 100.0
mean length 14.0 21.4 20.5 24.7 20.5 59.5 23.4
standard deviation 1.5 9.3 16.5 12.1 3.3 123.2  
O. lucimarinus        
total counts 5 2051 2208 285 610 1124 6283
density [bp/Mbp] 5.0 3075.5 3980.7 553.7 1160.2 2223.8 10941.6
density [%] 0.0 28.0 36.2 5.0 10.5 20.2 100.0
Mean length 13.2 19.8 23.8 25.7 25.2 26.2 23.1
standard deviation 0.5 8.2 11.0 9.6 9.3 9.9  
N. crassa        
total counts 3216 915 4484 1788 1000 1889 13292
density [bp/Mbp] 1971.0 535.5 2752.7 1095.2 619.3 1250.6 8207.7
density [%] 24.0 6.5 33.5 13.3 7.5 15.2 100.0
Mean length 24.0 23.0 24.1 24.0 24.4 26.1 24.3
standard deviation 11.7 14.4 17.6 14.4 10.7 14.7  
S. cerevisiae        
total counts 810 335 414 67 71 256 1953
density [bp/Mbp] 1157.7 646.7 900.4 118.6 133.4 639.1 3563.5
density [%] 32.2 18.0 25.0 3.3 3.7 17.8 100.0
mean length 17.3 23.3 26.5 21.4 22.7 30.2 22.3
standard deviation 5.5 10.8 15.4 8.0 5.4 27.7