From: Most transcription factor binding sites are in a few mosaic classes of the human genome
Data Source | Factor | P | Sites | Pair 2 | Pair 7 | Pair 9 | Pair 14 | Total |
---|---|---|---|---|---|---|---|---|
Note 1 | Note 2 | Note 3 | Note 4 | Note 5 | Note 5 | Note 5 | Note 5 | Note 6 |
HAIB-K562 | GABP | 0.71 | 2557 | 0.054 | 0.035 | 0.113 | 0.774 | 0.976 |
HAIB-K562 | NRSF | 0.74 | 2006 | 0.236 | 0.231 | 0.254 | 0.142 | 0.862 |
HAIB-K562 | SRF | 0.64 | 367 | 0.370 | 0.083 | 0.111 | 0.229 | 0.794 |
YALE-GM128 | NFKB | 0.50 | 2653 | 0.322 | 0.156 | 0.139 | 0.069 | 0.686 |
YALE-HCT116 | TCF7L2 | 0.50 | 3386 | 0.281 | 0.111 | 0.060 | 0.030 | 0.483 |
YALE-HepG2 | SREBP1 | 0.50 | 4958 | 0.237 | 0.092 | 0.137 | 0.276 | 0.742 |
YALE-K562b | GATA1 | 0.52 | 3367 | 0.322 | 0.221 | 0.146 | 0.048 | 0.736 |
YALE-K562b | TR4 | 0.51 | 541 | 0.144 | 0.083 | 0.216 | 0.426 | 0.870 |
YALE-K562b | ZNF263 | 0.64 | 5098 | 0.049 | 0.194 | 0.466 | 0.147 | 0.856 |
YALE-K562 | cFos | 0.53 | 3746 | 0.287 | 0.186 | 0.111 | 0.018 | 0.603 |
YALE-K562 | Max | 0.60 | 3176 | 0.210 | 0.100 | 0.180 | 0.185 | 0.675 |
YALE-K562 | NF-E2 | 0.81 | 4700 | 0.273 | 0.149 | 0.088 | 0.026 | 0.536 |
YALE-NT2D1 | YY1 | 0.50 | 2967 | 0.252 | 0.135 | 0.157 | 0.333 | 0.876 |
YALE-K562-Ia30 | STAT1 | 0.50 | 1039 | 0.398 | 0.104 | 0.077 | 0.059 | 0.638 |
ORegAnno | CTCF | 1.00 | 4858 | 0.202 | 0.181 | 0.353 | 0.169 | 0.905 |
TRANSFAC | sp1 | 0.62 | 693 | 0.045 | 0.075 | 0.332 | 0.512 | 0.966 |
TRANSFAC | p53 | 0.91 | 608 | 0.266 | 0.203 | 0.081 | 0.021 | 0.571 |
Average of above | Â | Â | Â | 0.232 | 0.138 | 0.178 | 0.204 | 0.751 |
Genome proportions | Â | Â | Â | 0.134 | 0.071 | 0.042 | 0.009 | 0.256 |
Model proportions | Â | Â | Â | 0.134 | 0.069 | 0.042 | 0.009 | 0.255 |
Promoter region | Â | Â | Â | 0.170 | 0.069 | 0.128 | 0.233 | 0.600 |