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Table 7 Distribution of transcription factor binding sites across mosaic classes for sites less than 1500 bases from a TSS

From: Most transcription factor binding sites are in a few mosaic classes of the human genome

Data Source Factor Q Sites Pair 2 Pair 7 Pair 9 Pair 14 Total
Note 1 Note 2 Note 3 Note 4 Note 5 Note 5 Note 5 Note 5 Note 6
HAIB-K562 GABP 0.77 1964 0.045 0.007 0.071 0.869 0.991
HAIB-K562 NRSF 0.15 292 0.091 0.091 0.192 0.567 0.940
HAIB-K562 SRF 0.24 87 0.197 0.035 0.087 0.609 0.928
YALE-GM128 NFKB 0.15 386 0.238 0.081 0.184 0.347 0.850
YALE-HCT116 TCF7L2 0.09 311 0.295 0.062 0.089 0.207 0.652
YALE-HepG2 SREBP1 0.43 2114 0.174 0.036 0.141 0.560 0.911
YALE-K562b GATA1 0.11 356 0.256 0.132 0.201 0.276 0.865
YALE-K562b TR4 0.65 350 0.145 0.040 0.158 0.599 0.943
YALE-K562b ZNF263 0.20 1019 0.041 0.089 0.329 0.443 0.902
YALE-K562 cFos 0.06 223 0.242 0.137 0.176 0.133 0.688
YALE-K562 Max 0.23 723 0.121 0.029 0.136 0.592 0.877
YALE-K562 NF-E2 0.07 320 0.249 0.106 0.120 0.225 0.699
YALE-NT2D1 YY1 0.39 1163 0.119 0.029 0.107 0.696 0.951
YALE-K562-Ia30 STAT1 0.14 141 0.298 0.061 0.140 0.313 0.812
ORegAnno CTCF 0.10 490 0.110 0.081 0.258 0.486 0.935
TRANSFAC sp1 0.59 412 0.033 0.024 0.198 0.722 0.977
TRANSFAC p53 0.05 29 0.166 0.062 0.194 0.365 0.787
Average of above     0.166 0.065 0.164 0.471 0.865
Genome proportions     0.134 0.071 0.042 0.009 0.256
Model proportions     0.134 0.069 0.042 0.009 0.255
Promoter region     0.170 0.069 0.128 0.233 0.600
  1. Note 8) Column 3 gives the proportion, Q, of sites that are less than 1500 bases from a transcription start site, and column 4 gives the number of these sites. Other notes are as for Table 2.