Most transcription factor binding sites are in a few mosaic classes of the human genome

BMC Genomics

Table 7 Distribution of transcription factor binding sites across mosaic classes for sites less than 1500 bases from a TSS

Data Source	Factor	Q	Sites	Pair 2	Pair 7	Pair 9	Pair 14	Total
Note 1	Note 2	Note 3	Note 4	Note 5	Note 5	Note 5	Note 5	Note 6
HAIB-K562	GABP	0.77	1964	0.045	0.007	0.071	0.869	0.991
HAIB-K562	NRSF	0.15	292	0.091	0.091	0.192	0.567	0.940
HAIB-K562	SRF	0.24	87	0.197	0.035	0.087	0.609	0.928
YALE-GM128	NFKB	0.15	386	0.238	0.081	0.184	0.347	0.850
YALE-HCT116	TCF7L2	0.09	311	0.295	0.062	0.089	0.207	0.652
YALE-HepG2	SREBP1	0.43	2114	0.174	0.036	0.141	0.560	0.911
YALE-K562b	GATA1	0.11	356	0.256	0.132	0.201	0.276	0.865
YALE-K562b	TR4	0.65	350	0.145	0.040	0.158	0.599	0.943
YALE-K562b	ZNF263	0.20	1019	0.041	0.089	0.329	0.443	0.902
YALE-K562	cFos	0.06	223	0.242	0.137	0.176	0.133	0.688
YALE-K562	Max	0.23	723	0.121	0.029	0.136	0.592	0.877
YALE-K562	NF-E2	0.07	320	0.249	0.106	0.120	0.225	0.699
YALE-NT2D1	YY1	0.39	1163	0.119	0.029	0.107	0.696	0.951
YALE-K562-Ia30	STAT1	0.14	141	0.298	0.061	0.140	0.313	0.812
ORegAnno	CTCF	0.10	490	0.110	0.081	0.258	0.486	0.935
TRANSFAC	sp1	0.59	412	0.033	0.024	0.198	0.722	0.977
TRANSFAC	p53	0.05	29	0.166	0.062	0.194	0.365	0.787
Average of above				0.166	0.065	0.164	0.471	0.865
Genome proportions				0.134	0.071	0.042	0.009	0.256
Model proportions				0.134	0.069	0.042	0.009	0.255
Promoter region				0.170	0.069	0.128	0.233	0.600

Note 8) Column 3 gives the proportion, Q, of sites that are less than 1500 bases from a transcription start site, and column 4 gives the number of these sites. Other notes are as for Table 2.

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