Table 1 Summary of the number of peaks per profile, homoplasy rate and maximum number of co-migrating fragments obtained in silico with different numbers of selective bases for each species.
From: Amplified fragment length homoplasy: in silico analysis for model and non-model species
Primer combinations | No. of peaks | Homoplasy rate (%) | ||||||
|---|---|---|---|---|---|---|---|---|
Species | No. of sba | GC contb | No tested | Mean | Range | Mean | Range | Max fragmc |
Bacillus thuringiensis ser. Konkukian | 1 | AT | 2 | 260 | 260 - 260 | 68.5 | 67.7 - 69.2 | 18 |
GC | 2 | 184 | 162 - 206 | 45.4 | 45.2 - 45.7 | 18 | ||
2 | AT | 4 | 140 | 122 - 165 | 37.2 | 28.4 - 41.8 | 16 | |
m | 8 | 98 | 47 - 136 | 22.8 | 8.5 - 42.8 | 6 | ||
GC | 4 | 60 | 42 - 76 | 13.9 | 8.2 - 22.3 | 14 | ||
3 | AT | 32 | 46 | 18 - 96 | 8.9 | 0 - 24.6 | 14 | |
GC | 32 | 21 | 5 - 47 | 7.8 | 0 - 15.4 | 14 | ||
Arabidopsis thaliana | 4 | AT | 27 | 207 | 139 - 283 | 46.6 | 27.3 - 58.5 | 64 |
m | 17 | 129 | 56 - 185 | 29.3 | 21.9 - 45.1 | 21 | ||
GC | 9 | 62 | 28 - 94 | 13.3 | 3.6 - 21.3 | 5 | ||
5 | AT | 12 | 77 | 32 - 115 | 18.5 | 8.8 - 30.4 | 8 | |
GC | 9 | 35 | 18 - 50 | 12.1 | 2.8 - 22 | 38 | ||
6 | AT | 5 | 26 | 12 - 54 | 8.8 | 0 - 20.4 | 3 | |
m | 11 | 12 | 4 - 21 | 4.3 | 0 - 15.4 | 3 | ||
GC | 10 | 7 | 2 - 12 | 6.6 | 0 - 28.5 | 33 | ||
Aedes aegypti | 5 | AT | 6 | 266 | 232 - 294 | 58.4 | 47.8 - 66.6 | 61 |
GC | 8 | 253 | 209 - 293 | 53.2 | 41.6 - 62.4 | 582 | ||
6 | AT | 17 | 156 | 94 - 234 | 36.7 | 27.5 - 59.8 | 400 | |
m | 22 | 109 | 61 - 148 | 27.8 | 18.1 - 40.2 | 284 | ||
GC | 14 | 58 | 33 - 97 | 15.8 | 7 - 32 | 180 | ||
7 | AT | 8 | 44 | 27 - 62 | 13.6 | 6.5 - 22.6 | 7 | |
GC | 5 | 25 | 17 - 39 | 11.6 | 0 - 18 | 6 | ||
8 | AT | 10 | 10 | 3 - 28 | 7.0 | 0 - 33.3 | 2 | |
m | 5 | 8 | 5 - 12 | 1.7 | 0 - 8.3 | 3 | ||
GC | 5 | 6 | 3 - 11 | 6.7 | 0 - 33.3 | 2 | ||