Clone | F | Log 2 F ± SD | p | GenBank | e-value | Def. | Id. | Annotated Gene Function (GO terms in Figure S3., additional file 4) | qRT-PCR | ||
---|---|---|---|---|---|---|---|---|---|---|---|
GSS | Fw | Rv | +/- | F ± SD | |||||||
Lin11D7 | 4.78 | 2.3 ± 0.2 | 0.002 | GS598854 | 6e-118 | 0 | b | LinJ31_V3.0460 | Amastin, putative (uTPS0) | + | 7.8 ± 0.2 |
Lin19D1 | 1.88 | 0.9 ± 0.3 | 0.028 | GS598855 | 3e-18 | 0 | b | LinJ08_V3.0680 | Amastin-like protein (uTPS0) | N.D. | |
LinJ08_V3.0690 | Amastin-like protein (uTPS0) | N.D. | |||||||||
Lin22E12 | 2.79 | 1.5 ± 0.1 | 0.001 | GS598856 | 0 | 0 | b | LinJ31_V3.1850 | Amino acid permease (uTPS13) | N.D. | |
Lin33G2 | 4.01 | 2.0 ± 0.8 | 0.044 | GS598857 | 6e-118 | 6e-118 | b | LinJ34_V3.4370 | Amastin-like surface protein, putative (uTPS0) | N.D. | |
Lin34G1 | 1.81 | 0.9 ± 0.1 | 0.008 | GS598858 | 0 | 0 | a | LinJ16_V3.0790 | Chitinase (uTPS18, uTPS8) | N.D. | |
Lin36B8 | 1.99 | 1.0 ± 0.2 | 0.015 | GS598859 | 0 | 0 | b | LinJ30_V3.3230 | 3-hydroxy-3-methyglutaryl-CoA reductase, putative (uTPS21, uTPS12) | N.D. | |
Lin50G2 | 3.38 | 1.8 ± 0.1 | 0.000 | GS598860 | 0 | 4e-153 | b | LinJ34_V3.2660 | Amastin-like surface protein (uTPS0) | + | 1.8 ± 0.0 |
Lin54G3 | 1.84 | 0.9 ± 0.3 | 0.027 | GS598861 | 0 | 0 | b | LinJ24_V3.1230 | Hypothetical protein, conserved | N.D. | |
LinJ24_V3.1240 | Translation factor SUI1, putative (uTPS0) | + | 3.1 ± 0.1 | ||||||||
Lin62D3 | 1.92 | 0.9 ± 0.4 | 0.040 | GS598862 | 0 | 0 | b | LinJ05_V3.0340 | Hypothetical protein, conserved | N.D. | |
LinJ05_V3.0350 | Trypanothione reductase (uTPS10, uTPS14, uTPS20) | + | 3.8 ± 0.4 | ||||||||
Lin62D10 | 1.76 | 0.8 ± 0.3 | 0.051 | GS598863 | 0 | 0 | b | LinJ17_V3.1150 | Esterase-like protein (uTPS5) | + | 18.5 ± 1.5 |
Lin66A8 | 3.59 | 1.8 ± 0.4 | 0.013 | GS598864 | 0 | 0 | b | LinJ22_V3.0470 | Hypothetical protein, conserved | N.D. | |
LinJ22_V3.0480 | Ubiquitin-conjugating enzyme-like protein (uTPS0) | + | 2.3 ± 0.2 | ||||||||
Lin66F8 | 1.92 | 0.9 ± 0.2 | 0.017 | GS598865 | 0 | 3e-132 | a | LinJ33_V3.2470 | Succinyl-CoA:3-ketoacid-CoA transferase, mitochondrial precursor, putative (3-oxoacid-CoA transferase) | - | -1.3 ± 0.3 |
LinJ33_V3.2480 | Hypothetical protein, conserved/RABreg (uTPS17) | N.D. | |||||||||
Lin77H8 | 5.63 | 2.5 ± 0.5 | 0.016 | GS598866 | 0 | 0 | b | LinJ08_V3.0690 | Amastin-like protein (uTPS0) | N.D. | |
Lin86H7 | 3.06 | 1.6 ± 0.2 | 0.004 | GS598867 | 0 | 2e-101 | b | LinJ08_V3.0700 | Amastin-like protein (uTPS0) | + | 9.5 ± 0.3 |
Lin87H2 | 4.20 | 2.1 ± 0.3 | 0.008 | GS598868 | 3e-15 | 3e-33 | b | LinJ08_V3.0690 | Amastin-like protein (uTPS0) | N.D. | |
Lin89D9 | 1.71 | 0.8 ± 0.3 | 0.043 | GS598869 | 0 | 0 | b | LinJ21_V3.0770 | ATP-binding cassette sub-family E, putative (uTPS9, uTPS11, uTPS24, uTPS28) | N.D. | |
Lin90B6 | 1.71 | 0.8 ± 0.3 | 0.040 | GS598870 | 0 | 0 | b | LinJ30_V3.0640 | Ribosome biogenesis regulatory protein (RRS1), putative (uTPS0) | + | 16.4 ± 0.2 |
LinJ30_V3.0650 | Histidyl-tRNA synthetase, putative | N.D. | |||||||||
LinJ30_V3.0660 | Hypothetical protein, conserved | N.D. | |||||||||
Lin90H2 | 1.76 | 0.8 ± 0.1 | 0.005 | GS598871 | 0 | 0 | b | LinJ30_V3.2200 | RNA-binding protein (uTPS3, uTPS6, uTPS15, uTPS16) | N.D. | |
Lin91B12 | 5.24 | 2.4 ± 0.3 | 0.004 | GS598872 | 0 | 0 | b | LinJ34_V3.2660 | Amastin-like surface protein (uTPS0) | + | 1.8 ± 0.0 |
Lin92H5 | 2.48 | 1.3 ± 0.5 | 0.041 | GS598873 | 0 | 0 | b | LinJ28_V3.2060 | Zinc transporter, putative (uTPS23) | + | 45.7 ± 0.5 |
LinJ28_V3.2070 | Hypothetical protein, conserved | N.D. | |||||||||
Lin93E3 | 1.83 | 0.9 ± 0.4 | 0.033 | 0 | 0 | b | LinJ10_V3.0410 | Pteridine transporter ft3, putative (uTPS0) | N.D. | ||
Lin104C10 | 6.68 | 2.7 ± 0.1 | 0.001 | GS598874 | 0 | 0 | b | LinJ08_V3.1320 | Amastin-like protein (uTPS0) | N.D. | |
Lin106A1 | 2.43 | 1.3 ± 0.0 | 0.000 | GS598875 | 0 | 0 | c | LinJ06_V3.1200 | Hypothetical protein, conserved | N.D. | |
LinJ31_V3.0590 | Amino acid transporter aATP11, putative (uTPS13) | + | 2.6 ± 0.0 | ||||||||
Lin113C3 | 1.87 | 0.9 ± 0.1 | 0.040 | GS598876 | 3e-74 | 0 | a | LinJ14_V3.1440 | Pteridine transporter (uTPS0) | + | 1.9 ± 0.0 |
LinJ14_V3.1450 | Myo-inositol-1-phosphate synthase (uTPS0) | + | 2.1 ± 0.3 | ||||||||
Lin118A11 | 2.90 | 1.5 ± 0.3 | 0.010 | GS598877 | 0 | 7e-28 | c | LinJ30_V3.0630 | Nitrate reductase, putative (uTPS0) | + | 3.7 ± 0.3 |
LinJ36_V3.2480 | Glyceraldehyde-3-phosphate dehydrogenase, putative | N.D. | |||||||||
Lin119F3 | 3.40 | 1.8 ± 0.2 | 0.005 | GS598878 | 0 | 0 | b | LinJ25_V3.2570 | Phosphoglycan beta-1,3-galactosyltransferase 6 (uTPS22) | N.D. | |
Lin123D6 | 2.91 | 1.5 ± 0.1 | 0.002 | GS598879 | - | 0 | c | LinJ34_V3.2660 | Amastin-like surface protein (uTPS0) | + | 1.8 ± 0.0 |
Lin137A10 | 1.98 | 1.0 ± 0.3 | 0.039 | GS598880 | 0 | 0 | b | LinJ24_V3.1230 | Hypothetical protein, conserved | N.D. | |
LinJ24_V3.1240 | Translation factor SUI1, putative (uTPS0) | + | 3.1 ± 0.1 | ||||||||
Lin142H9 | 1.74 | 0.8 ± 0.1 | 0.004 | GS598881 | 0 | 0 | b | LinJ31_V3.0460 | Amastin, putative (uTPS0) | + | 7.8 ± 0.2 |
Lin146E3 | 2.35 | 1.2 ± 0.4 | 0.038 | GS598882 | 0 | 0 | b | LinJ31_V3.0590 | Amino acid transporter aATP11, putative (uTPS13) | + | 2.6 ± 0.0 |
Lin156B2 | 1.82 | 0.9 ± 0.2 | 0.025 | GS598883 | 0 | 0 | b | LinJ33_V3.2960 | Hypothetical protein, conserved/Transcription regulator (uTPS 1, uTPS4, uTPS7) | N.D. | |
Lin162A9 | 4.29 | 2.1 ± 0.2 | 0.004 | GS598884 | 0 | 0 | b | LinJ22_V3.0470 | Hypothetical protein, conserved | N.D. | |
LinJ22_V3.0480 | Ubiquitin-conjugating enzyme-like protein (uTPS0) | + | 2.3 ± 0.2 | ||||||||
Lin165E2 | 3.48 | 1.8 ± 0.2 | 0.004 | GS598885 | 0 | 0 | b | LinJ22_V3.0680 | 3'a2rel-related protein (uTPS0) | + | 4.0 ± 0.4 |
Lin183A3 | 1.75 | 0.8 ± 0.1 | 0.010 | GS598886 | 0 | 0 | b | LinJ24_V3.2250 | Hypothetical protein, conserved/GPDE (uTPS26) | N.D. | |
Lin185A12 | 4.53 | 2.2 ± 0.2 | 0.002 | GS598887 | 0 | 0 | b | LinJ34_V3.2660 | Amastin-like surface protein, putative (uTPS0) | + | 1.8 ± 0.0 |
Lin188H2 | 3.20 | 1.7 ± 0.6 | 0.042 | GS598888 | 0 | 0 | c | LinJ08_V3.0680 | Amastin-like protein (uTPS0) | N.D. | |
Lin194E2 | 3.22 | 1.7 ± 0.4 | 0.023 | GS598889 | 7e-56 | 4e-153 | b | LinJ08_V3.0710 | Amastin-like protein (uTPS0) | + | 9.5 ± 0.3 |
Lin197A12 | 1.95 | 1.0 ± 0.2 | 0.016 | GS598890 | 0 | 0 | a | LinJ31_V3.2540 | Lipase, putative (uTPS19) | N.D. | |
Lin201F8 | 2.00 | 1.0 ± 0.4 | 0.041 | GS598891 | 0 | 0 | b | LinJ31_V3.3330 | Phosphoglycan beta-1,3-galactosyltransferase 5 (uTPS22) | N.D. | |
Lin206B6 | 5.40 | 2.4 ± 0.5 | 0.012 | GS598892 | 7e-133 | 0 | b | LinJ22_V3.0680 | 3'a2rel-related protein (uTPS0) | + | 4.0 ± 0.4 |
Lin210C4 | 2.77 | 1.5 ± 0.1 | 0.003 | GS598893 | 0 | 0 | b | LinJ08_V3.0690 | Amastin-like protein (uTPS0) | N.D. | |
Lin223F2 | 1.73 | 0.8 ± 0.3 | 0.044 | GS598894 | 0 | 0 | b | LinJ13_V3.0330 | Unknown/Tubulin associated GTPase (uTPS2, uTPS25, uTPS27) | N.D. | |
Lin224G2 | 2.20 | 1.1 ± 0.2 | 0.023 | GS598895 | 0 | 0 | b | LinJ08_V3.0720 | Amastin-like protein (uTPS0)0 | N.D. | |
Lin235G8 | 3.16 | 1.7 ± 0.2 | 0.003 | GS598896 | 0 | 0 | b | LinJ08_V3.1320 | Amastin-like protein (uTPS0) | N.D. | |
Lin245E2 | 2.61 | 1.4 ± 0.4 | 0.040 | GS598897 | 0 | 0 | b | LinJ22_V3.0680 | 3'a2rel-related protein (uTPS0) | + | 4.0 ± 0.4 |
Lin267D9 | 2.06 | 1.0 ± 0.2 | 0.010 | GS598898 | 9e-111 | 0 | b | LinJ16_V3.0590 | Carbamoyl-phosphate synthetase, putative (uTPS0) | + | 2.9 ± 0.4 |
LinJ16_V3.0600 | Histone H3, putative | - | 1.3 ± 0.2 | ||||||||
Lin274G6 | 5.77 | 2.5 ± 0.2 | 0.003 | GS598899 | 0 | 0 | b | LinJ08_V3.0680 | Amastin-like protein (uTPS0) | N.D. | |
LinJ08_V3.0690 | Amastin-like protein (uTPS0) | N.D. | |||||||||
Lin275A8 | 2.72 | 1.4 ± 0.2 | 0.006 | GS598900 | 0 | 4e-168 | b | LinJ08_V3.0720 | Amastin-like protein (uTPS0) | N.D. | |
Lin276B6 | 1.76 | 0.8 ± 0.3 | 0.041 | GS598901 | 0 | 0 | b | LinJ31_V3.2540 | Lipase, putative (uTPS19) | N.D. | |
Lin294A11 | 4.86 | 2.3 ± 0.1 | 0.001 | GS598902 | 0 | 0 | b | LinJ08_V3.1320 | Amastin-like protein (uTPS0) | N.D. | |
Lin295D9 | 4.40 | 2.1 ± 0.1 | 0.000 | GS598903 | 0 | 0 | b | LinJ34_V3.1720 | Amastin-like surface protein, putative (uTPS0) | N.D. | |
Lin310F2 | 2.34 | 1.2 ± 0.5 | 0.046 | GS598904 | 0 | 0 | b | LinJ23_V3.1220 | Hydrophilic surface protein (HASPB) (uTPS0) | N.D. | |
cLinA2 | 6.45 | 2.7 ± 0.1 | 0.000 | S69693 | - | - | - | - | L. infantum A2 gene -- DNA microarray control spot | ||
cLdoA2 | 2.51 | 1.3 ± 0.3 | 0.021 | - | - | - | - | - | L. donovani A2 gene -- DNA microarray control spot |