Table 1 Differentially expressed proteins identified in Cr(VI)-challenged LB-grown F1
From: Proteomics reveals a core molecular response of Pseudomonas putida F1 to acute chromate challenge
Gene ID | Functional category | Protein function | Poisson regression coefficient | FDR |
|---|---|---|---|---|
Pput 4553 | Inorganic ion transport and metabolism | periplasmic binding protein | 26.59 | 3.89E-17 |
Pput 0942 | Coenzyme transport and metabolism | Methyltransferase type 11 | 26.54 | 2.60E-16 |
Pput 1043 | Inorganic ion transport and metabolism | TonB-dependent hemoglobin/transferrin/lactoferrin family receptor | 25.63 | 1.59E-06 |
Pput 4550 | Unknown Function | protein of unknown function DUF399 | 25.29 | 9.88E-05 |
Pput 0984 | Energy production and conversion | fumarate lyase | 25.06 | 3.01E-27 |
Pput 1680 | Secondary metabolites biosynthesis, transport and catabolism | amino acid adenylation domain | 24.97 | 1.82E-03 |
Pput 1675 | Secondary metabolites biosynthesis, transport and catabolism | amino acid adenylation domain | 24.84 | 6.16E-08 |
Pput 1968 | Inorganic ion transport and metabolism | periplasmic solute binding protein | 24.76 | 2.34E-07 |
Pput 1678 | Inorganic ion transport and metabolism | TonB-dependent siderophore receptor | 24.38 | 4.17E-05 |
Pput 1640 | Amino acid transport and metabolism | 2,4-diaminobutyrate 4-transaminase | 23.81 | 9.88E-08 |
Pput 1961 | Unknown Function | MbtH domain protein | 23.60 | 2.47E-06 |
Pput 5216 | Intracellular trafficking, secretion and vesicular transport | TonB system transport protein ExbD type-1 | 23.42 | 2.62E-05 |
Pput 0892 | Unknown Function | 2OG-Fe(II) oxygenase | 23.24 | 1.54E-04 |
Pput 5104 | Energy production and conversion | Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | 22.97 | 1.82E-03 |
Pput 3040 | Cell Motility | hypothetical protein | 22.78 | 1.55E-07 |
Pput 0943 | none | lipopolysaccharide kinase | 22.76 | 7.08E-03 |
Pput 0603 | Unknown Function | hypothetical protein | 22.76 | 7.08E-03 |
Pput 1679 | Unknown Function | protein of unknown function DUF323 | 22.76 | 7.08E-03 |
Pput 3610 | Cell wall membrane and envelope biogenesis | Lytic transglycosylase, catalytic | 22.76 | 7.08E-03 |
Pput 1973 | Secondary metabolites biosynthesis, transport and catabolism | Lysine/ornithine N-monooxygenase-like protein | 22.76 | 2.34E-07 |
Pput 0636 | Coenzyme transport and metabolism | aminotransferase class-III | -0.73 | 9.20E-03 |
Pput 3436 | Carbohydrate transport and metabolism | methylisocitrate lyase | -0.74 | 6.72E-03 |
Pput 0936 | Energy production and conversion | hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit | -0.76 | 2.05E-12 |
Pput 2460 | Post translational modification and protein turnover chaperones | heat shock protein Hsp20 | -0.80 | 1.67E-03 |
Pput 1617 | Energy production and conversion | cytochrome c oxidase, cbb3-type, subunit II | -0.90 | 1.30E-05 |
Pput 1610 | Energy production and conversion | cytochrome c oxidase, cbb3-type, subunit III | -0.92 | 4.85E-05 |
Pput 1615 | Energy production and conversion | cytochrome c oxidase, cbb3-type, subunit III | -0.92 | 2.47E-06 |
Pput 1123 | Inorganic ion transport and metabolism | bacterioferritin | -1.06 | 9.58E-03 |
Pput 2593 | Lipid transport and metabolism | 3-oxoacid CoA-transferase, B subunit | -1.16 | 3.81E-03 |
Pput 4498 | Lipid transport and metabolism | acetyl-CoA acetyltransferase | -1.23 | 3.34E-07 |
Pput 4329 | Amino acid transport and metabolism | thiamine pyrophosphate enzyme TPP binding domain protein | -1.25 | 4.49E-03 |
Pput 1388 | Amino acid transport and metabolism | putative agmatinase | -1.82 | 8.75E-11 |
Pput 0143 | Energy production and conversion | cytochrome c, class I | -1.84 | 5.95E-09 |
Pput 2061 | Inorganic ion transport and metabolism | catalase/peroxidase HPI | -2.01 | 8.74E-07 |
Pput 3734 | Energy production and conversion | NADH:flavin oxidoreductase/NADH oxidase | -2.60 | 1.37E-04 |
Pput 2594 | Lipid transport and metabolism | 3-oxoacid CoA-transferase, A subunit | -3.14 | 7.15E-09 |
Pput 2025 | Transcription | transcriptional regulator, GntR family | -19.95 | 9.31E-03 |
Pput 1948 | none | cytochrome c, class I | -22.49 | 1.37E-04 |
Pput 1559 | Transcription | putative transcriptional regulator, AsnC family | -22.95 | 9.31E-03 |
Pput 2382 | Energy production and conversion | Gluconate 2-dehydrogenase | -23.20 | 1.83E-03 |
Pput 3735 | Transcription | AraC-type transcriptional regulator domain protein | -24.08 | 4.39E-03 |
Pput 1496 | Signal transduction mechanisms | Two-component, sigma54 specific, transcriptional regulator, Fis family | -24.95 | 9.31E-03 |