Skip to main content

Table 1 EhSINE1s detected in this study - basic summary data.

From: Bioinformatic analysis of Entamoeba histolytica SINE1 elements

Repeats No. of
EhSINE1s. (%)
Length,
range (bp)
Length ,
mean ± SD (bp)
With TSDs# - No. (%)
     All
significant
No mis-match
allowed
0 or 1 mis-
match allowed
1 158 (40) 451-536 510 ± 22.9* 131 (83) 53 (34) 80 (51)
2 67 (17) 543-555 548 ± 1.8 65 (97) 19 (29) 48 (71)
3 7 (2) 516-575 ND§ 6 (86) 1 (14) 4 (57)
R1 only 6 (1) 467-539 ND§ 5 (80) 1 (17) 3 (50)
R3 only 89 (23) 460-612 573 ± 27 78 (88) 13 (15) 48 (54)
4 3 (1) 600-602 ND§ 3 (100) 0 (0) 3 (100)
None 63 (16) 451-684 561+58.7 42 (67) 19 (30) 33 (52)
TOTAL 393 (100) 451-684 541 ± 41.5 324 (82) 106 (27) 219 (56)
  1. * Excludes those with 26 bp deletion
  2. # By definition, ≥7 bp long