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Table 2 List of the 43 most significant repeats in the genome of strain B8, ordered by increasing E-value.

From: Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8

length in bp

position

strand

length in bp

position

number of differences

E-value

sequence identity in %

3241

352423

+

3242

646346

2

0.00e + 00

99.94

818

1614435

+

819

1615640

94

0.00e + 00

88.52

801

1490715

+

802

1543145

6

0.00e + 00

99.25

648

984653

+

647

1039045

1

0.00e + 00

99.85

4381

447896

-

4384

1528769

30

0.00e + 00

99.32

2059

287098

+

2060

912424

4

0.00e + 00

99.81

1164

396381

-

1165

832923

11

0.00e + 00

99.06

• 2207

96959

+

2201

323043

39

0.00e + 00

98.23

2439

210771

+

2438

628615

4

0.00e + 00

99.84

563

690091

+

563

690481

11

0.00e + 00

98.05

588

273255

+

588

1414805

11

0.00e + 00

98.13

• 1135

590750

+

1134

1083761

79

0.00e + 00

93.04

2213

580672

-

2213

901965

7

0.00e + 00

99.68

508

715518

+

514

720788

14

1.88e - 259

97.28

799

692230

+

796

692782

109

4.26e - 247

86.36

663

130801

-

671

1311865

104

1.76e - 186

84.50

602

167233

+

602

869141

87

8.22e - 176

85.55

425

272770

+

425

1414201

32

1.54e - 170

92.47

396

351462

-

395

1070874

28

1.56e - 161

92.93

298

445088

-

298

1538257

9

1.06e - 143

96.98

398

131808

-

401

1311134

40

1.08e - 142

90.02

282

447722

-

280

1533034

11

7.50e - 130

96.10

421

496148

-

424

526803

61

6.03e - 121

85.61

276

627392

+

277

627526

16

1.58e - 116

94.22

406

130325

-

406

1312519

58

5.69e - 116

85.71

205

213298

+

207

631421

2

4.58e - 107

99.03

468

692461

+

474

693450

91

5.98e - 103

80.80

308

444293

-

316

1539031

40

6.68e - 96

87.34

233

692119

+

233

692236

15

3.32e - 93

93.56

213

85440

-

216

468947

11

2.05e - 91

94.91

232

692120

+

232

692789

16

1.05e - 90

93.10

279

105830

+

279

1670378

32

9.03e - 89

88.53

225

1437117

-

226

1456289

18

1.55e - 83

92.04

243

693340

+

244

693664

24

5.80e - 83

90.16

394

691841

+

396

692394

77

8.27e - 83

80.56

191

397488

-

193

832659

9

3.26e - 82

95.34

264

667779

-

263

1052938

31

3.39e - 82

88.26

319

130360

-

318

630425

51

1.95e - 80

84.01

319

130360

-

318

212583

51

1.95e - 80

84.01

264

798608

+

267

800003

34

6.00e - 79

87.27

323

691912

+

323

693019

54

4.38e - 78

83.28

367

913847

+

367

1312534

70

7.92e - 78

80.93

  1. In particular, all repeats of minimum length 100 with at least 80% sequence identity are shown. The length and the position of the first and second instance of the repeat are shown in column 1 and 2 and in column 4 and 5. The strand of the repeat is given in column 3. Column 6 shows the number of differences (i.e. insertions, deletions, replacements) in an optimal alignment of the two repeat instances. Column 7 shows the E-value of the repeat and column 8 the sequence identity. The two bullets mark the repeats also occurring in all four H. pylori reference strains 26695, J99, HPAG1, and P12.
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BMC Genomics

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