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Table 2 List of the 43 most significant repeats in the genome of strain B8, ordered by increasing E-value.

From: Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8

length in bp position strand length in bp position number of differences E-value sequence identity in %
3241 352423 + 3242 646346 2 0.00e + 00 99.94
818 1614435 + 819 1615640 94 0.00e + 00 88.52
801 1490715 + 802 1543145 6 0.00e + 00 99.25
648 984653 + 647 1039045 1 0.00e + 00 99.85
4381 447896 - 4384 1528769 30 0.00e + 00 99.32
2059 287098 + 2060 912424 4 0.00e + 00 99.81
1164 396381 - 1165 832923 11 0.00e + 00 99.06
• 2207 96959 + 2201 323043 39 0.00e + 00 98.23
2439 210771 + 2438 628615 4 0.00e + 00 99.84
563 690091 + 563 690481 11 0.00e + 00 98.05
588 273255 + 588 1414805 11 0.00e + 00 98.13
• 1135 590750 + 1134 1083761 79 0.00e + 00 93.04
2213 580672 - 2213 901965 7 0.00e + 00 99.68
508 715518 + 514 720788 14 1.88e - 259 97.28
799 692230 + 796 692782 109 4.26e - 247 86.36
663 130801 - 671 1311865 104 1.76e - 186 84.50
602 167233 + 602 869141 87 8.22e - 176 85.55
425 272770 + 425 1414201 32 1.54e - 170 92.47
396 351462 - 395 1070874 28 1.56e - 161 92.93
298 445088 - 298 1538257 9 1.06e - 143 96.98
398 131808 - 401 1311134 40 1.08e - 142 90.02
282 447722 - 280 1533034 11 7.50e - 130 96.10
421 496148 - 424 526803 61 6.03e - 121 85.61
276 627392 + 277 627526 16 1.58e - 116 94.22
406 130325 - 406 1312519 58 5.69e - 116 85.71
205 213298 + 207 631421 2 4.58e - 107 99.03
468 692461 + 474 693450 91 5.98e - 103 80.80
308 444293 - 316 1539031 40 6.68e - 96 87.34
233 692119 + 233 692236 15 3.32e - 93 93.56
213 85440 - 216 468947 11 2.05e - 91 94.91
232 692120 + 232 692789 16 1.05e - 90 93.10
279 105830 + 279 1670378 32 9.03e - 89 88.53
225 1437117 - 226 1456289 18 1.55e - 83 92.04
243 693340 + 244 693664 24 5.80e - 83 90.16
394 691841 + 396 692394 77 8.27e - 83 80.56
191 397488 - 193 832659 9 3.26e - 82 95.34
264 667779 - 263 1052938 31 3.39e - 82 88.26
319 130360 - 318 630425 51 1.95e - 80 84.01
319 130360 - 318 212583 51 1.95e - 80 84.01
264 798608 + 267 800003 34 6.00e - 79 87.27
323 691912 + 323 693019 54 4.38e - 78 83.28
367 913847 + 367 1312534 70 7.92e - 78 80.93
  1. In particular, all repeats of minimum length 100 with at least 80% sequence identity are shown. The length and the position of the first and second instance of the repeat are shown in column 1 and 2 and in column 4 and 5. The strand of the repeat is given in column 3. Column 6 shows the number of differences (i.e. insertions, deletions, replacements) in an optimal alignment of the two repeat instances. Column 7 shows the E-value of the repeat and column 8 the sequence identity. The two bullets mark the repeats also occurring in all four H. pylori reference strains 26695, J99, HPAG1, and P12.